Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)                    28   3.6  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   6.3  

>SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 345 DYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLK 446
           ++Y H+   +F LLV   GNF ++L  V+  +++
Sbjct: 31  EFYGHTAFQIFILLVTFYGNFMVVLAVVLFHRMR 64


>SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 345 DYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLK 446
           +YY H    +  LLV   GNF ++L  V+  +++
Sbjct: 27  EYYGHMAFQIIILLVTFYGNFMVVLAVVMFRRMR 60


>SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)
          Length = 950

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 LFPFDYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLKYSV 455
           +F    Y   N ++  L ++I+GNF  ++   V I+ KY +
Sbjct: 811 IFSISVYCRLNFTMSYLELLIQGNFLNLIKAEVYIEAKYGI 851


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 299  LKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYS--WKFQNYSDYRRYHKIKILSP 457
            L + + F    ++++ L++ F Y F  V       WKFQ Y   + YH   + +P
Sbjct: 844  LAIYMVFTNILLLNL-LIAIFNYTFERVQEDSDKVWKFQRYDLVQEYHSRPVFAP 897


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,620
Number of Sequences: 59808
Number of extensions: 261108
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)