Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022366-1|AAY54782.1|  104|Drosophila melanogaster IP05121p pro...    32   0.48 
AE014297-118|AAO41499.1|  166|Drosophila melanogaster CG32945-PA...    32   0.48 
U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ...    28   7.9  
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA...    28   7.9  

>BT022366-1|AAY54782.1|  104|Drosophila melanogaster IP05121p
           protein.
          Length = 104

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   FGTSLKSVTITFSDPIKFEHTCQANERRVQDILV-CLQNCPTQKRQPS 143
           FG SLK V   F  P+K+   C+    + ++ LV C Q  P +  Q S
Sbjct: 32  FGKSLKLVQELFGTPVKWAKDCEGEIEKFEEELVHCYQRFPNEPLQCS 79


>AE014297-118|AAO41499.1|  166|Drosophila melanogaster CG32945-PA
           protein.
          Length = 166

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   FGTSLKSVTITFSDPIKFEHTCQANERRVQDILV-CLQNCPTQKRQPS 143
           FG SLK V   F  P+K+   C+    + ++ LV C Q  P +  Q S
Sbjct: 94  FGKSLKLVQELFGTPVKWAKDCEGEIEKFEEELVHCYQRFPNEPLQCS 141


>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
            acid-bindingglycoprotein protein.
          Length = 3351

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 390  QRVTEIKIYSNVDNNRMETINVRLNRKSTFN*VHAKIEGNE 268
            ++V  IKI SN D N+M+ ++V ++R+     +  K E N+
Sbjct: 1255 KQVGGIKIMSNFDVNKMD-VDVEISREQKIGSIIVKYESNQ 1294


>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
            protein.
          Length = 3351

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 390  QRVTEIKIYSNVDNNRMETINVRLNRKSTFN*VHAKIEGNE 268
            ++V  IKI SN D N+M+ ++V ++R+     +  K E N+
Sbjct: 1255 KQVGGIKIMSNFDVNKMD-VDVEISREQKIGSIIVKYESNQ 1294


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,812
Number of Sequences: 53049
Number of extensions: 370397
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)