Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-14|CAA20965.1|  234|Caenorhabditis elegans Hypothetical...    28   4.2  
AL031627-12|CAA20963.2|  305|Caenorhabditis elegans Hypothetical...    28   4.2  
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    27   5.5  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    27   5.5  
AL132943-9|CAB81982.1|  233|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC006615-5|AAK68229.1|   97|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    27   9.7  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    27   9.7  

>AL031627-14|CAA20965.1|  234|Caenorhabditis elegans Hypothetical
           protein Y102A5C.24 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 239 NRFS*LVNPISFPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSW 400
           NRF  +V P+ + SIF+ +    L+ F+ T    + +L +F Y+++     YSW
Sbjct: 30  NRFCSIVAPVRYESIFSASNTTKLIIFSWT----LTILPSF-YLYVYNDCKYSW 78


>AL031627-12|CAA20963.2|  305|Caenorhabditis elegans Hypothetical
           protein Y102A5C.22 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 239 NRFS*LVNPISFPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSW 400
           NRF  +V P+ + SIF+ +    L+ F+ T    + +L +F Y+++     YSW
Sbjct: 101 NRFCSIVAPVRYESIFSASNTTKLIIFSWT----LTILPSF-YLYVYNDCKYSW 149


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +2

Query: 239 NRFS*LVNPISFPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIF 373
           NRF  +  PI++ ++ + T+ KV++ F  +FI+S+  L+    I+
Sbjct: 100 NRFCAVFLPIAYKTLLSSTRTKVIIAF--SFILSLAFLTILFQIY 142


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 305 VLLRF-NLTFIVSIRLLSTFEYIFISVTRCYS 397
           VLLRF NLT I+++ L++  E+IFI     YS
Sbjct: 127 VLLRFTNLTTIMNVLLITMNEFIFICHPLRYS 158


>AL132943-9|CAB81982.1|  233|Caenorhabditis elegans Hypothetical
           protein Y116F11B.13 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 286 ENRRKRNWINELTKSILLKSKNNRRCYY 203
           E + K+NW  E    ++  SKN  R Y+
Sbjct: 194 EKQEKKNWEEEYDLILIFNSKNQLRTYF 221


>AC006615-5|AAK68229.1|   97|Caenorhabditis elegans Hypothetical
           protein C36B7.3 protein.
          Length = 97

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  EHTCQANERRVQDILVCLQNCPTQKRQPSKFH 152
           EH+ +  E  + +  +C+++ P QKR P  FH
Sbjct: 52  EHSSECLEGLICEKQICIES-PIQKRHPRSFH 82


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 272  FPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFI-SVTRCYS-WKFQNYSDYRRYHKIK 445
            FP  F    L V+       ++   L++ F  I+  S+ +    W FQ Y     YH   
Sbjct: 1100 FPGYFIPPLLMVIFLLVANILLLNLLIAIFNNIYNDSIEKSKEIWLFQRYQQLMEYHDSP 1159

Query: 446  ILSPRF 463
             L P F
Sbjct: 1160 FLPPPF 1165


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 350 LSTFEYIFISVTRCYSWKFQNYSDYRRYHKIKILSPRF 463
           L    Y    V +CY+ KF +Y    RY KI    P++
Sbjct: 424 LPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPGPQY 461


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1122

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 272  FPSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFI-SVTRCYS-WKFQNYSDYRRYHKIK 445
            FP  F    L V+       ++   L++ F  I+  S+ +    W FQ Y     YH   
Sbjct: 816  FPGYFIPPLLMVIFLLVANILLLNLLIAIFNNIYNDSIEKSKEIWLFQRYQQLMEYHDSP 875

Query: 446  ILSPRF 463
             L P F
Sbjct: 876  FLPPPF 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,527,666
Number of Sequences: 27780
Number of extensions: 209477
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)