Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 395 SWKFQNYSDYRRYHK 439
           ++K+ NY++Y  Y+K
Sbjct: 88  NYKYSNYNNYNNYNK 102


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 175 NLLNFAIGNHNNIYDY 222
           ++LN  + +H+N+Y Y
Sbjct: 30  SMLNSHLKSHSNVYQY 45


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +3

Query: 66  CQANERRVQDILVCLQNCPTQKR 134
           C+ +      + VC++ CP + R
Sbjct: 93  CELSPNSTIAVCVCMRKCPRRHR 115


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 FYDLISRLLFPFDYYL 356
           + D +SR  FPF + +
Sbjct: 358 YIDKVSRFFFPFSFLI 373


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 437 YDNDGSQNNFEISTNNN 387
           Y+N+   NN+    NNN
Sbjct: 329 YNNNNYNNNYNNYNNNN 345


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 232 KSKNNRRCYYDSRLQN 185
           KSKNN  C  D+   N
Sbjct: 61  KSKNNHHCNQDTEKLN 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,081
Number of Sequences: 438
Number of extensions: 2761
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)