Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0447
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38950.1 68417.m05519 kinesin motor family protein similar to...    29   2.2  
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT...    27   6.8  

>At4g38950.1 68417.m05519 kinesin motor family protein similar to
           AtNACK1 kinesin-like protein (GI:19979627) [Arabidopsis
           thaliana]; similar to kinesin-like protein NACK1
           (GI:19570247) [Nicotiana tabacum]
          Length = 836

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 278 SIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSWKFQNYSDY 424
           SIFA+ Q      + +T I    +   F+YIF    R +S KF     Y
Sbjct: 94  SIFAYGQTSSGKTYTMTGITEFAVADIFDYIFQHEERAFSVKFSAIEIY 142


>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
           / homeodomain containing protein 1 (H1) identical to
           homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
           [Arabidopsis thaliana]
          Length = 383

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 283 NRRKRNW-INELTKSILLKSKNNR 215
           N+RKRNW  N  T S L K+K  R
Sbjct: 356 NQRKRNWNSNSSTSSTLTKNKRKR 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,885
Number of Sequences: 28952
Number of extensions: 185985
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)