Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0443
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 99 9e-23
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 55 2e-09
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 52 2e-08
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 50 7e-08
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 50 9e-08
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 47 7e-07
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 46 1e-06
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 45 3e-06
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 42 3e-05
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 39 2e-04
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 33 0.011
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 32 0.026
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 27 0.75
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 1.3
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 26 1.7
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 25 3.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 4.0
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 24 5.3
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 24 7.0
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 24 7.0
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 23 9.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 9.2
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 23 9.2
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 23 9.2
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 99 bits (238), Expect = 9e-23
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHV 194
D+EGNVCLNILR+DW PVL +NSI+ GLQ+LFL PN EDPLNKEAA +L + + F V
Sbjct: 99 DIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRV 158
Query: 195 QRAMRGGYVGTSYFERCL 248
+ AM+GG V F+ +
Sbjct: 159 RTAMKGGLVNGISFDNVM 176
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 55.2 bits (127), Expect = 2e-09
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+ILR+ W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 82 GSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYE 135
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 52.4 bits (120), Expect = 2e-08
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAAD 155
D+ GN+CL+IL++ W V V +I+ LQ L EPN PLN +AA+
Sbjct: 107 DMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAE 153
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 50.4 bits (115), Expect = 7e-08
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 170
D G +CL+ L++DW P L + +++ +Q L PNP+DPL+ + A + N
Sbjct: 80 DKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKEN 131
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 50.0 bits (114), Expect = 9e-08
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 15 DLEGNVCLNILRED-WKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQ 188
D EGNVCL IL++ +KP + + S++ + L EPNP+DPL A++ +++R F++
Sbjct: 85 DSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 47.2 bits (107), Expect = 7e-07
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 24 GNVCLNILRED--WKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G VCL+IL E+ WKP +T+ I+ G+Q L +PN P EA + ++ +E+ V+
Sbjct: 90 GTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149
Query: 198 RAMR 209
R
Sbjct: 150 AQAR 153
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 46.4 bits (105), Expect = 1e-06
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRA 203
G +CL+IL+ W P V +I+ +Q L +PN P N EAA + N++ + + V++
Sbjct: 85 GELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKT 144
Query: 204 MRGGY 218
+ +
Sbjct: 145 VEDSW 149
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 45.2 bits (102), Expect = 3e-06
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF 182
G +CL+IL++ W PV T+ S + LQ L P P +P + + A N + F
Sbjct: 86 GAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQF 138
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.5 bits (93), Expect = 3e-05
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVL-TVNSIVYGLQYLFLEPNPEDPLNKEAA 152
+L G+VCL+++ + W P+ +N L L PN DPLN EAA
Sbjct: 79 ELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAA 125
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 38.7 bits (86), Expect = 2e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV + +I+ + + PN E P N +AA E + N + F++ V+R +R
Sbjct: 109 ERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVR 161
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 33.1 bits (72), Expect = 0.011
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQS 167
G VC++IL+ W P ++ S + L + PLN +AA L++
Sbjct: 87 GEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRT 134
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.026
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV +V I+ + + EPN E N +A + +R + + V+R R
Sbjct: 109 ERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLAR 161
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 0.75
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 132 PLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYF 236
PL E +LQ R+L +H+Q GG VGT F
Sbjct: 49 PLQPEDTQDLQ--RKLKPRHMQMIAIGGCVGTGLF 81
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 FGTRDLEG-NVCLNILREDWKPVLTVNS 83
FGT D + VC LREDW V NS
Sbjct: 40 FGTSDSDNARVCNESLREDWMHVAGNNS 67
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 142 RKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNETC 261
RK + S TGD ++ F AA + ND S+ C
Sbjct: 157 RKYMECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTKC 196
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 3.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 260 QVSFEASFEIRCADVAASHSSL--NVLFEKSPVALELVSCFLVEGIFRVWFQE*ILETVH 87
QVS + R D H+ + + L + S + L C FR+ F + + E+
Sbjct: 9 QVSIRTACCRRWIDCIECHNEIADHPLLKTSELTLICKKC---RKAFRIQFDQTMDESDE 65
Query: 86 YGVNCENRFPI 54
Y NC+N F I
Sbjct: 66 YCPNCDNHFVI 76
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 132 PLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYF 236
P+ + D + R L +H+Q GG +GT F
Sbjct: 69 PVKADREDGVALKRHLKGRHMQMIAIGGAIGTGLF 103
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 138 NKEAADELQSNRRLFEQHVQRAMRGGYVGTSYFERCL 248
+K D LQS R FE H GT Y + L
Sbjct: 279 HKSMRDALQSERSFFEHHPAYRTIKDRCGTPYLAKTL 315
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 23.8 bits (49), Expect = 7.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 173 PVALELVSCFLVEGIFRVWFQE*ILETVHYGVNCENRFPIF 51
P+ ELV EG+ R+ F ET G+N R +F
Sbjct: 445 PILKELVEILFQEGLVRILF---ATETFSIGLNMPARTVLF 482
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 159 LQSNRRLFEQHVQRAMRGGYVGTSYFERCL 248
L++ R FE H + Y GT + R L
Sbjct: 269 LEAERNFFETHPSYGSKAQYCGTPFLARKL 298
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 16 TSKATCA*IYSGKIGNLFSQLTP*CTVSSIYSWNQTL 126
T + A +Y G +FSQ T T + +W Q L
Sbjct: 353 TIEGLLAQVYDELYGRVFSQETDSMTPEQVANWQQFL 389
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 9.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 91 TVSSIYSWNQTLKIPSTRKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASN 252
T SS+ S + T ++ +SS A+ ++ T +ATS+ L S ASN
Sbjct: 135 TSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 183 EQHVQRAMRGGYVGTSY 233
E + R +RG YVGT Y
Sbjct: 117 ETEMDRMVRGAYVGTLY 133
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 162 QSNRRLFEQHVQRAMRGGYVGTSYF 236
++ R L +HVQ GG +GT F
Sbjct: 37 ETKRALKSRHVQLIAIGGCIGTGLF 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,374
Number of Sequences: 5004
Number of extensions: 23351
Number of successful extensions: 94
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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