Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0443
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 59 9e-10
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 59 9e-10
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 54 2e-08
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 54 2e-08
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 54 2e-08
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 50 3e-07
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 50 3e-07
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 44 2e-05
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 44 3e-05
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 42 1e-04
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 40 3e-04
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 39 0.001
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 37 0.004
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 35 0.016
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.021
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 33 0.050
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.20
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 31 0.26
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 28 1.4
Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical pr... 28 1.9
AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein. 28 1.9
AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical... 27 2.5
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 27 4.3
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 27 4.3
Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical pr... 26 5.7
AL032644-1|CAA21666.2| 604|Caenorhabditis elegans Hypothetical ... 26 5.7
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 7.5
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 26 7.5
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 7.5
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical pr... 25 10.0
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 58.8 bits (136), Expect = 9e-10
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 200
+G++CL+IL+ W P V +I+ +Q L EPNP P N AA Q NRR +E+ VQ+
Sbjct: 84 DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143
Query: 201 AMRGGYV 221
+ ++
Sbjct: 144 IVEQSWL 150
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 58.8 bits (136), Expect = 9e-10
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 200
+G++CL+IL+ W P V +I+ +Q L EPNP P N AA Q NRR +E+ VQ+
Sbjct: 84 DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143
Query: 201 AMRGGYV 221
+ ++
Sbjct: 144 IVEQSWL 150
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQ 188
G++CL+ILR W P LT++ ++ + L +PNP+DPL E A +++R + Q
Sbjct: 82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQ 188
G++CL+ILR W P LT++ ++ + L +PNP+DPL E A +++R + Q
Sbjct: 82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 54.0 bits (124), Expect = 2e-08
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 170
D G +CL+IL++ W P L + +++ +Q L PNPEDPL + A++ ++N
Sbjct: 82 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTN 133
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 24 GNVCLNILRE--DWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G VCL++L E DWKP +++ ++ G+Q L PN EDP EA NR +E+ V+
Sbjct: 90 GTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVK 149
Query: 198 R 200
+
Sbjct: 150 K 150
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 24 GNVCLNILRE--DWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G VCL++L E DWKP +++ ++ G+Q L PN EDP EA NR +E+ V+
Sbjct: 90 GTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVK 149
Query: 198 R 200
+
Sbjct: 150 K 150
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 15 DLEGNVCLNILR-EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF--- 182
D EG CL I+ E+WKP ++ L L EP P P+ + A+E Q + + F
Sbjct: 80 DEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRADVAEEFQKDHKKFMKT 139
Query: 183 -EQHVQR 200
E+H ++
Sbjct: 140 AEEHTRK 146
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF 182
G +CL+IL++ W LT+ +++ LQ + P P DP + A + +N +F
Sbjct: 118 GTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMF 170
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G +CL+IL++ W LT+ +++ +Q L P P+DP + A + +F+
Sbjct: 89 GVICLDILKDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFK 142
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Frame = +3
Query: 15 DLEGNVCLNILR-------------EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAAD 155
D EGNVC++IL E W PV TV +I+ + + +PN E P N +AA
Sbjct: 82 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAK 141
Query: 156 ELQSNRRLFEQHVQRAMR 209
+ N F++ V + +R
Sbjct: 142 MQRENYAEFKKKVAQCVR 159
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = +3
Query: 21 EGNVCLNILRED------WKPVLTVNSIVYGLQYLFLE-PNPEDPLNKEAADELQSNRRL 179
+G++CL+ILR++ W+P + +V+GL LF + + D LN +AA NR
Sbjct: 108 DGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRES 167
Query: 180 FEQHVQ 197
F V+
Sbjct: 168 FNHRVR 173
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV ++ I+ + + EPN E P N AA + +R FE+ +R
Sbjct: 108 ERWSPVQSIEKILLSVVSMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVR 160
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 34.7 bits (76), Expect = 0.016
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 42 ILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNR 173
+L+E+WKP T+ ++ L L EP+ P+N +AA + N+
Sbjct: 102 LLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNIDAAHDYIHNK 145
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYG-LQYLFLEPNPEDPLNKEAA 152
+ G VCL+++ + W + + +I L L PN DPLN EAA
Sbjct: 82 EASGTVCLDVINQAWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAA 128
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 33.1 bits (72), Expect = 0.050
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSI 86
G++CL+IL +DW P L+V S+
Sbjct: 89 GHICLSILSDDWTPALSVQSV 109
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 30 VCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDP 134
VC + +DWKP TV ++ QY+ + N DP
Sbjct: 856 VCRSFTLKDWKPGNTVLTLSANHQYILISGNQSDP 890
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 21 EGNVCLNILRED-WKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQ 188
+G +CL+ + W +T+ ++ +Q N ++P++ E ++ +NR +FE+
Sbjct: 430 DGTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEK 486
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAA 152
E W P +V +I+ + L EPN P N +A+
Sbjct: 113 ERWNPTQSVRTILLSVISLLNEPNTSSPANVDAS 146
>Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical
protein F44F4.7 protein.
Length = 327
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 106 YSWNQTLKIPSTRKQLTSSKATGDFSN--NTFRELCEAATSAHLISN 240
YSW + L I Q+ S+ + + S NTF E+C T AH+I N
Sbjct: 156 YSWIR-LDIVLDDYQMFCSQWSANISTRANTFLEICSYLTVAHIIIN 201
>AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein.
Length = 327
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 106 YSWNQTLKIPSTRKQLTSSKATGDFSN--NTFRELCEAATSAHLISN 240
YSW + L I Q+ S+ + + S NTF E+C T AH+I N
Sbjct: 156 YSWIR-LDIVLDDYQMFCSQWSANISTRANTFLEICSYLTVAHIIIN 201
>AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical
protein Y71A12B.13a protein.
Length = 205
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 PSTRKQLTSSKATGDFSN-NTFRELCEAATSAHLISNDASNETCTR 267
PS R TS + +GDFSN ++FR A + L S D T +R
Sbjct: 40 PSNRTMGTSIQISGDFSNLSSFRPENSAISEIVLDSGDEEEVTDSR 85
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 81 SIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMRG 212
S + + Y + +P P P+N ++ QSN RLF++ + RG
Sbjct: 2 SRISSMAYKWKQPPP--PINDDSRHRSQSNSRLFDRIYGQMHRG 43
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 269 TRVQVSFEASFEIRCADVAASHSSLNVLFEKSPVALELVSCFLVEGIFRVWFQE*ILETV 90
T +S S + + SSL LF S ++LV+ F V F V F L ++
Sbjct: 295 TLATISLSNSLLVNILSAFSVRSSLTYLFRNSTRDVKLVNLFRVCSSFWVIFSHTCLFSL 354
Query: 89 HY 84
H+
Sbjct: 355 HF 356
>Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical
protein T13H10.2 protein.
Length = 468
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 148 QLTSSKATGDFSNNTFRELCEAATSAHLISN 240
++++ K GDFS+ + R+ EAA + L N
Sbjct: 325 KISTDKRLGDFSDFSIRQTIEAAKAEELTGN 355
>AL032644-1|CAA21666.2| 604|Caenorhabditis elegans Hypothetical
protein Y51H1A.2 protein.
Length = 604
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 RRQRVP-EYTQGRLETCSHS*LHSVRSPVFILGTKP*RSPQ 139
+R+ VP E TQ + +H +R P F+ GT+ + P+
Sbjct: 51 KRENVPSEITQNLCNSIEAIFIHGLRDPFFLKGTRYAKYPE 91
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 127 KIPSTRKQLTSSKATG---DFSNNTFRELCEAATSAH 228
K T++QLT+++ D SNNT LC+ ++H
Sbjct: 40 KFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSH 76
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 82 P*CTVSSIYSWNQTLKIPSTRKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNETC 261
P CT + Q + I T K+ + + N RE+C S +LI + E C
Sbjct: 191 PICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILSTKQIERC 250
Query: 262 TRV 270
++
Sbjct: 251 VKL 253
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 127 KIPSTRKQLTSSKATG---DFSNNTFRELCEAATSAH 228
K T++QLT+++ D SNNT LC+ ++H
Sbjct: 40 KFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSH 76
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 100 WRPYTMELTVRTGFQSSLSIFRH 32
WRP T L ++ GF + +F H
Sbjct: 389 WRPVTFTLVLKMGFLTRSILFAH 411
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 97 SSIYSWNQTLKIPSTRKQLTSSKATGDFSNNT 192
S+ + N T K T+K++ KATG+ N+
Sbjct: 541 STAAALNLTFKNDGTKKEIEEEKATGNHERNS 572
>Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical
protein F59B2.12 protein.
Length = 918
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 127 KIPSTRKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNETCT 264
K+ T Q S S++ ++ + A + ISND+SN+T +
Sbjct: 627 KVDKTSSQAADSHDAISASSDVDAKIVKHADRSESISNDSSNQTAS 672
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,115,747
Number of Sequences: 27780
Number of extensions: 131071
Number of successful extensions: 377
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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