Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0443
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative stron... 115 9e-27
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 58 2e-09
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 56 6e-09
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 56 8e-09
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 56 8e-09
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 55 1e-08
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 55 1e-08
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 55 1e-08
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 55 1e-08
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 55 1e-08
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 55 1e-08
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 54 2e-08
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 54 2e-08
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 54 2e-08
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 54 2e-08
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 54 2e-08
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 54 2e-08
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 2e-08
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 2e-08
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 53 4e-08
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 53 4e-08
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 53 5e-08
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 53 5e-08
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 53 5e-08
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 52 1e-07
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 52 1e-07
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 48 1e-06
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 47 3e-06
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 47 3e-06
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 47 3e-06
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 47 4e-06
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 46 8e-06
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 44 3e-05
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 44 3e-05
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 44 3e-05
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 43 4e-05
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 35 0.012
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 34 0.027
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 33 0.036
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 32 0.083
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 30 0.33
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 28 1.4
At2g25800.1 68415.m03096 expressed protein 28 1.4
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 26 5.5
At1g74770.1 68414.m08663 expressed protein 26 5.5
At3g19270.1 68416.m02444 cytochrome P450 family protein similar ... 25 9.5
At1g21060.1 68414.m02634 expressed protein contains Pfam profile... 25 9.5
>At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative strong
similarity to gi:6635457 RUB1 conjugating enzyme
[Arabidopsis thaliana]; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 185
Score = 115 bits (276), Expect = 9e-27
Identities = 51/78 (65%), Positives = 62/78 (79%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHV 194
DLEGNVCLNILREDWKPVL +N+++YGL +LF EPN EDPLN EAA L+ N + FE +V
Sbjct: 108 DLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNV 167
Query: 195 QRAMRGGYVGTSYFERCL 248
+RAM GG VG + F RC+
Sbjct: 168 RRAMMGGQVGQTSFPRCM 185
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 200
+G++CL+IL+ W P+ V +++ +Q L +PNP+ P N EAA N+R + + V
Sbjct: 84 DGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIE 143
Query: 201 AMRGGYV 221
+ YV
Sbjct: 144 IVEQSYV 150
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 56.0 bits (129), Expect = 6e-09
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
EG++C+NIL++ W P L V ++ + L +PNP+DPL E ++NR F+Q +
Sbjct: 87 EGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAR 145
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.6 bits (128), Expect = 8e-09
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G++CL+IL+E W P LTV+ ++ + L +PNP+DPL E A +++R +E Q
Sbjct: 82 GSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQ 139
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.6 bits (128), Expect = 8e-09
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G++CL+IL+E W P LTV+ ++ + L +PNP+DPL E A +++R +E Q
Sbjct: 82 GSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQ 139
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 83 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 136
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 135
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.2 bits (127), Expect = 1e-08
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A +++R +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 54.8 bits (126), Expect = 1e-08
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQR 200
+G++CL+IL+ W P+ V +I+ +Q L +PNP P N EAA ++R + + V+
Sbjct: 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143
Query: 201 AM 206
+
Sbjct: 144 VV 145
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A ++++ +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A ++++ +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A ++++ +E
Sbjct: 112 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 165
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
G++CL+IL+E W P LT++ ++ + L +PNP+DPL E A ++++ +E
Sbjct: 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 54.4 bits (125), Expect = 2e-08
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFE 185
GN+CL+IL++ W P LT++ ++ + L +PNP+DPL E A ++++ +E
Sbjct: 82 GNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYE 135
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLT-VNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQH 191
+L G+VCL+++ + W P+ VN L L L PNP DPLN EAA + +R +EQ
Sbjct: 79 ELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQR 138
Query: 192 VQ 197
V+
Sbjct: 139 VK 140
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
+G++CL+IL+ W P+ V +I+ +Q L +PNP P N EAA ++R + + V+
Sbjct: 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 21 EGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
+G++CL+IL+ W P+ V +I+ +Q L +PNP P N EAA ++R + + V+
Sbjct: 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHV 194
DL GN+CL+IL++ W V +I+ +Q L EPN PLN +AA +L SN+ + + V
Sbjct: 114 DLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAA-QLWSNQEEYRKMV 172
Query: 195 QR 200
++
Sbjct: 173 EK 174
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLT-VNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQH 191
++ G+VCL+++ + W P+ VN L L L PNP DPLN EAA + +R +EQ
Sbjct: 79 EMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQR 138
Query: 192 VQ 197
V+
Sbjct: 139 VK 140
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 52.8 bits (121), Expect = 5e-08
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 170
D G +CL+IL++ W P L + +++ +Q L PNP+DPL++ A +SN
Sbjct: 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSN 134
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 52.8 bits (121), Expect = 5e-08
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 170
D G +CL+IL++ W P L + +++ +Q L PNP+DPL++ A +SN
Sbjct: 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSN 134
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 52.8 bits (121), Expect = 5e-08
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSN 170
D G +CL+IL++ W P L + +++ +Q L PNP+DPL++ A +SN
Sbjct: 50 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSN 101
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHV 194
D +G++CL+IL+E W P T + ++ + L +PNP DPL E A + ++ +E
Sbjct: 80 DSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTA 139
Query: 195 QR 200
Q+
Sbjct: 140 QK 141
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHV 194
D+ GN+CL+IL++ W V +I+ +Q L EPN PLN +AA +L SN+ + + V
Sbjct: 113 DVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAA-QLWSNQEEYRKMV 171
Query: 195 QR 200
++
Sbjct: 172 EK 173
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 48.4 bits (110), Expect = 1e-06
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF 182
G +CL+IL++ W P LT+ + + +Q L P P+DP + A++ N ++F
Sbjct: 85 GAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVF 137
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G +C+N L++DW P L + ++ ++ L +EP PE LN++A L N + +H +
Sbjct: 91 GEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHAR 148
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV TV SIV + + PN E P N EAA E + NR F + V R +R
Sbjct: 109 ERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVR 161
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLT-VNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQ 197
G VCL+++ + W P+ +N L L L PNP DP N EAA L +R +E V+
Sbjct: 82 GAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVK 140
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +3
Query: 24 GNVCLNILRED--WKPVLTVNSIVYGLQYLFLEPNPEDP 134
G VCL+IL ED W+P +TV I+ G+Q L PNP DP
Sbjct: 91 GTVCLSILNEDYGWRPAITVKQILVGIQDLLDTPNPADP 129
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 45.6 bits (103), Expect = 8e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +3
Query: 15 DLEGNVCLNIL----REDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLF 182
D G +CL+IL + W+P L +++++ ++ L EPNP+D L E + E + NR+ F
Sbjct: 93 DNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTF 152
Query: 183 E 185
+
Sbjct: 153 D 153
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 44.0 bits (99), Expect = 3e-05
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDP 134
D G++ +NILR+ W P LT+ ++ ++ +FL+P P P
Sbjct: 114 DTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSP 153
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV TV SI+ + + PN E P N EAA E + R F++ V R +R
Sbjct: 140 ERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVR 192
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 51 EDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 209
E W PV TV SI+ + + PN E P N EAA E + R F++ V R +R
Sbjct: 108 ERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVR 160
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYGLQYLFLEPNPEDPLNKEAADELQS 167
G +CL+IL+ W P T+ S+ + L P P+ PLN ++ + L+S
Sbjct: 87 GEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRS 134
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYG-LQYLFLEPNPEDPLNKE 146
G++CL+IL + W P +TVNS+ L L P + P + +
Sbjct: 96 GHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADND 137
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSIVYG-LQYLFLEPNPEDPLNKE 146
G++CL+IL + W P +TV+S+ L L P + P + +
Sbjct: 96 GHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDND 137
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 33.5 bits (73), Expect = 0.036
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSI 86
G++CL+IL+E W P LT++ +
Sbjct: 82 GSICLDILKEQWSPALTISKV 102
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 32.3 bits (70), Expect = 0.083
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSI 86
G++CL+IL + W P +TV+SI
Sbjct: 96 GHICLDILYDSWSPAMTVSSI 116
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 15 DLEGNVCLNILREDWKPVLTVNSIVYGLQYL 107
D G +CL+IL++ W P L + +++ L+Y+
Sbjct: 83 DKLGRICLDILKDKWSPALQIRTVL--LRYM 111
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 28.3 bits (60), Expect = 1.4
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 24 GNVCLNILREDWKPVLTVNSI 86
G++CL++L + W P + ++SI
Sbjct: 96 GHICLDVLYDSWSPAMRLSSI 116
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 88 CTVSSIYSWNQTLKIPSTRKQLTSSKATGDFSNNTFRELCEAATSAHLISND 243
CT S + W + K P+T+K+ + ++ ++C S H I ++
Sbjct: 703 CTTGSKFQWKKKEKTPTTQKRESQVSVMNGENSFGVTQICVRINSLHKIRSE 754
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 115 NQTLKIPSTRKQLTSSKATGDFSNNTFRELCEAA 216
++ L++ +KQL++S T D N+ C+AA
Sbjct: 1218 SKALEVLDLKKQLSASSRTIDEPRNSLESYCDAA 1251
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 136 STRKQLTSSKATGDFSNNTFRELCEAATSAHLISNDASNETC 261
S +K+ T +A+G FSN T +LC+ + + D S+ TC
Sbjct: 522 SCQKEHTE-EASGSFSNQTQLQLCKVSKDVYPRKKDKSS-TC 561
>At3g19270.1 68416.m02444 cytochrome P450 family protein similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 468
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 109 SWNQTLKIPSTRKQLTSSKATGDFSNNTFRE 201
+W QT +P T K + S + TFRE
Sbjct: 323 TWRQTRNMPLTHKVIVESLRMASIISFTFRE 353
>At1g21060.1 68414.m02634 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 505
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 88 CTVSSIYSWNQTLKIPSTRKQLTSSKATGDFSNNTFRELCEA 213
CT+SS N L+ + SSKAT D N+ E EA
Sbjct: 203 CTLSSKARINSCLQASPSSPSSVSSKATFDSLNSRHEERKEA 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,584,873
Number of Sequences: 28952
Number of extensions: 118665
Number of successful extensions: 366
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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