Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0441
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    56   3e-09
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   8.0  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 477
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 478 FLT 486
           ++T
Sbjct: 176 YMT 178



 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 RDISREGTYQGKHTILVNKGLR*G 235
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 293 SIEDYPQILKLEEYDPLQELHHL 361
           SIED   ++KLE+ DP+  + H+
Sbjct: 276 SIED-KSLIKLEDLDPVDSISHM 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,577
Number of Sequences: 5004
Number of extensions: 20985
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)