Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0441
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   1.8  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   1.8  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   1.8  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   7.2  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   7.2  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   7.2  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,668,119
Number of Sequences: 27780
Number of extensions: 107767
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)