BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0441 (486 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 29 1.8 AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 1.8 AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 1.8 U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 7.2 U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 27 7.2 M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 7.2 >U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus homeodomain, axonguidance protein 1 protein. Length = 596 Score = 29.1 bits (62), Expect = 1.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 340 PSRITPFNPFQIPLLNTIIL 399 PS +TPFNP+Q+ + I+L Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101 >AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. Length = 596 Score = 29.1 bits (62), Expect = 1.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 340 PSRITPFNPFQIPLLNTIIL 399 PS +TPFNP+Q+ + I+L Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101 >AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. Length = 596 Score = 29.1 bits (62), Expect = 1.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 340 PSRITPFNPFQIPLLNTIIL 399 PS +TPFNP+Q+ + I+L Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101 >U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated protein 104, isoforma protein. Length = 1584 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459 R+ PFN +I + +L +G T T HS+ + NFS Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46 >U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated protein 104, isoformb protein. Length = 1628 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459 R+ PFN +I + +L +G T T HS+ + NFS Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46 >M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related protein protein. Length = 1584 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 346 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 459 R+ PFN +I + +L +G T T HS+ + NFS Sbjct: 9 RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,668,119 Number of Sequences: 27780 Number of extensions: 107767 Number of successful extensions: 191 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 191 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 903458030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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