Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23YF9 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_Q22RK2 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  
UniRef50_A0EFT2 Cluster: Chromosome undetermined scaffold_94, wh...    31   8.8  
UniRef50_Q5KNP8 Cluster: Lipid particle protein, putative; n=1; ...    31   8.8  

>UniRef50_Q23YF9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 361

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +1

Query: 154 LVLIARFSHYCIFIYLLVVCFVSR*FVNNL*CIVCRNIELFLVLFRLIF 300
           L++I+    YCIFIYL +  F+           + +NI LFL+LF LIF
Sbjct: 268 LLIISNQQMYCIFIYLFIYLFI---------FYLYKNI-LFLILFNLIF 306


>UniRef50_Q22RK2 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1276

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 246 VYRLS*YRTISRIVSFNFLYPVNSSRASERTHTLFFFFSIKSCKLNYKLND 398
           +Y L+  +  S+++ FNF   +NS+  S+ + T F F   ++  + +K ND
Sbjct: 588 IYNLNNVKLASQVILFNFQEDINSNTTSQISFTNFLF---ENSNITFKQND 635


>UniRef50_A0EFT2 Cluster: Chromosome undetermined scaffold_94, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_94,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 351

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -3

Query: 412 ISHATSFNL*FNLQDFIEKKKKSVCVRSDARLEFTGYKKLNETIREIVLYYDKRYTTDY* 233
           ++H T  NL F     I  +KK    +    L+FT  +K+N +       ++KR T    
Sbjct: 200 VTHKTQKNLYFRATPTISSEKKKQSKKILQILKFTQQRKINNSTNNDSNTFNKRTT---- 255

Query: 232 QINETQNKRLTNI*KYNNERNARSVR 155
           QIN        NI   N +RN  ++R
Sbjct: 256 QINSYSFNNTQNI-FLNGKRNGENMR 280


>UniRef50_Q5KNP8 Cluster: Lipid particle protein, putative; n=1;
           Filobasidiella neoformans|Rep: Lipid particle protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 652

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 30  NALCA*LAPDCVMRARANQEPTRGRVIAGDAGLLRRQSATKPRTD 164
           NA  A +AP  + ++R+   PT G  ++GDA L+  +  ++ R +
Sbjct: 13  NATAALIAPSPITKSRSPLTPTEGAPLSGDAALIPNKYLSEKRDE 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,099,878
Number of Sequences: 1657284
Number of extensions: 6699747
Number of successful extensions: 17633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17623
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)