Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    29   0.44 
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   0.58 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   3.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   9.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    24   9.4  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 21/91 (23%), Positives = 43/91 (47%)
 Frame = -3

Query: 361 EKKKKSVCVRSDARLEFTGYKKLNETIREIVLYYDKRYTTDY*QINETQNKRLTNI*KYN 182
           E + ++V     A+ E    ++L + +R++   Y +   T    +N  Q  R+T+   +N
Sbjct: 326 ESELENVIASRLAQREEILRRELEKQLRDMDARYQRHMQT---VVNSMQKMRVTSPVDHN 382

Query: 181 NERNARSVRGFVADCRRSSPASPAITRPRVG 89
            +  + +   FV DC   +  SP +  P++G
Sbjct: 383 EQPESSTAEMFV-DCTIEASQSPLLHIPKLG 412


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 184 NNERNA-RSVRGFVADCRRSSPASPAITRPRVGS*LARARITQS 56
           NNE NA RS    + + R+S+  SP++     G+ +  AR++ S
Sbjct: 239 NNENNALRSTANVINNTRQSTATSPSMFAGNSGNQIGLARVSSS 282


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 103 ALSQVTPGCCAGSPPQSLVLIARFSHYC 186
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 258 TNDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALW 145
           T +   I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 532 TLELQDILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 81  NQEPTRGRVIAGDAGLLRR--QSATKPRTDRAFLSLLYFHIFVSRLFCVSL 227
           N E T   V    A L+ +   S T+ R +R FLS+ YF     R+F + L
Sbjct: 455 NDETTNAAVEICMAELVLQYLSSDTQTRLNRLFLSIKYFSEKAMRVFILLL 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,835
Number of Sequences: 5004
Number of extensions: 28344
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)