Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    30   0.99 
08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    29   1.3  
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737           29   1.7  
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    28   3.0  
02_01_0694 - 5194649-5195227                                           27   5.3  
08_02_0288 + 15352104-15352294,15352806-15352831,15352890-153530...    27   7.0  
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    27   7.0  
01_05_0432 - 22087658-22087999                                         27   7.0  

>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 ISTRLCGGLPAQQPGVTCDNAAARWLLIGARTHHAIRSQSG 42
           ++ +  G + A+  G T    A RWL I A+ HHA    +G
Sbjct: 206 VAVKATGTVHAKAIGDTLKAYARRWLPIAAKNHHAAERTAG 246


>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 379 NLQDFIEKKKKSVCVRSDARLEFTGYKKLNETIREIVLYYD 257
           +L+D    +K     R DA + F G K + E++++ +LYYD
Sbjct: 108 DLRDKGALEKVFASTRFDAVVHFAGLKAVGESVQKPLLYYD 148


>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
          Length = 767

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 412 ISHATSFNL*FNLQDFIEKKKKSVCVRSDARLEFTGYKKLNETIRE 275
           ++H+  F   F LQ F+EK  KS         +F G K L + +RE
Sbjct: 121 LAHSVCFYCWFLLQYFLEKLSKSASKEFGLNKDFGGQKLLLQYLRE 166


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 334 RSDARLEFTGYKKLNETIREIVLYYD 257
           R DA + F G K + E++++ +LYYD
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYD 118


>02_01_0694 - 5194649-5195227
          Length = 192

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 60  CVMRARANQEPTRGRVIAGDAGLLRRQSATKP 155
           C+ R R +  P   RVIA D  L    +A  P
Sbjct: 7   CISRRRGSPVPAPARVIAADGSLKELHAAASP 38


>08_02_0288 +
           15352104-15352294,15352806-15352831,15352890-15353074,
           15353850-15353896,15354224-15354269
          Length = 164

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 97  AAALSQVTPGCCAGSPPQSLVLIARFS 177
           A A++ +TP CC G+    L+   RFS
Sbjct: 2   AMAVAWLTPQCCIGAGSAILIFYTRFS 28


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 334 RSDARLEFTGYKKLNETIREIVLYYD 257
           R +A + F G K + E++++ +LYYD
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYD 107


>01_05_0432 - 22087658-22087999
          Length = 113

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 175 RNARSVRGFVADCRRSSPASPAITRPR 95
           R AR++   V  CR S P++P   RPR
Sbjct: 79  RRARAIVQAVTHCRLSRPSTPPPRRPR 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,428
Number of Sequences: 37544
Number of extensions: 171160
Number of successful extensions: 427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)