Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)             27   9.5  
SB_37313| Best HMM Match : AT_hook (HMM E-Value=3.3)                   27   9.5  
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)                  27   9.5  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)             27   9.5  

>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 78  ANQEPTRGRVIAGDAGLLRRQSATKPRTDRAFLSL 182
           A QEP  G+++   AGLLR+     P  D  FL L
Sbjct: 451 AGQEPRAGKLVMRHAGLLRK----SPSRDEDFLPL 481


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 194 YIC*SFVLCLVNLLIICS 247
           Y+C + V+CL+N+L+ C+
Sbjct: 871 YLCGNMVMCLLNMLLSCA 888


>SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)
          Length = 201

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 170 VSLIIVFSYIC*SFVL-CLVNLLIICS 247
           V + + F Y     VL CLVNLL++CS
Sbjct: 131 VGVFLAFPYFTGFCVLACLVNLLVLCS 157


>SB_37313| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 203

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -3

Query: 373 QDFIEKKKKSVCVRSDARLEFTGYKKLNETIREIVLYYDKRYTTDY*QINETQNKRLTN 197
           +DF++K  K  CV           K+       I   YDKR    Y +  E + KR  N
Sbjct: 144 KDFLKKDLKIGCVLETWNYHVHNRKEWRAITNNICTSYDKRRYETYLKQREARRKREEN 202


>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
          Length = 509

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 148 VADCRRSSPASPAITRPRVGS*LARARITQSGANQA 41
           +AD +  +P + A+ RP V   LARA  +Q+   QA
Sbjct: 349 IADVQHRAPRTQAVARPWVRICLARAHFSQAVYVQA 384


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 148  VADCRRSSPASPAITRPRVGS*LARARITQSGANQA 41
            +AD +  +P + A+ RP V   LARA  +Q+   QA
Sbjct: 957  IADVQHRAPRTQAVARPWVRICLARAHFSQAVYVQA 992


>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 176 LIIVFSYIC*SFVLCLVNLLIICSVS 253
           LII+F +I    V+  +N++ IC+VS
Sbjct: 10  LIIIFIFIAIIVVVSAINIICICTVS 35


>SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)
          Length = 320

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 267 YITTNDTLQIINKLTRHKTND*QIYENTIMRETRDQY 157
           Y TT + L   NKL RHK     + +  +  E  ++Y
Sbjct: 48  YYTTINNLLRANKLWRHKLKTEMVKDELVFEEKHERY 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,856
Number of Sequences: 59808
Number of extensions: 217693
Number of successful extensions: 574
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)