Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001861-1|AAN71624.1|  683|Drosophila melanogaster RH66426p pro...    28   5.0  
AF234630-1|AAF40433.1|  683|Drosophila melanogaster IX-14 protei...    28   5.0  
AE014297-1107|AAF54501.2|  683|Drosophila melanogaster CG3953-PA...    28   5.0  
AE014134-586|AAF51123.1|  466|Drosophila melanogaster CG15408-PA...    28   5.0  

>BT001861-1|AAN71624.1|  683|Drosophila melanogaster RH66426p
           protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 72  ARANQEPTRGRVIAGDAGLLRRQSATKPRTDRAFLSLLYFHIFVSRLFCVSL 227
           A   QE    R IAG A L     +TKP+  +  +S +   I  +  F VSL
Sbjct: 218 AHCQQEAALDRPIAGHANLCPESISTKPQELQTLISTVKHEILHALGFSVSL 269


>AF234630-1|AAF40433.1|  683|Drosophila melanogaster IX-14 protein
           protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 72  ARANQEPTRGRVIAGDAGLLRRQSATKPRTDRAFLSLLYFHIFVSRLFCVSL 227
           A   QE    R IAG A L     +TKP+  +  +S +   I  +  F VSL
Sbjct: 218 AHCQQEAALDRPIAGHANLCPESISTKPQELQTLISTVKHEILHALGFSVSL 269


>AE014297-1107|AAF54501.2|  683|Drosophila melanogaster CG3953-PA
           protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 72  ARANQEPTRGRVIAGDAGLLRRQSATKPRTDRAFLSLLYFHIFVSRLFCVSL 227
           A   QE    R IAG A L     +TKP+  +  +S +   I  +  F VSL
Sbjct: 218 AHCQQEAALDRPIAGHANLCPESISTKPQELQTLISTVKHEILHALGFSVSL 269


>AE014134-586|AAF51123.1|  466|Drosophila melanogaster CG15408-PA
           protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 233 LIICSVSFVVI*NYFSYCFV*FFISSKLQSCVG--ADTHTFFFFFNK 367
           +++CS+   ++ N F  C   + IS+ + SC G  A +  +F +F K
Sbjct: 410 IVVCSIFVFLMLNIFPICMKQWGISATMWSCAGVTALSSLYFTYFMK 456


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,298,946
Number of Sequences: 53049
Number of extensions: 302134
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)