Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.6  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    28   2.7  
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   8.3  

>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 167 RVSLIIVFSYIC*SFVLCLVNLLIICSVSFVVI*NYFSYCFV*FFISSKLQSCV 328
           ++ L+++  +   S+VL + N  ++  +S     N+  YC V FFI S L + V
Sbjct: 24  KIQLVLLLEHFQASYVLIITNFQLLLEISGSDK-NWIYYCVVSFFIISTLGATV 76


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
            see also lmb-protein 2 protein.
          Length = 1535

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 376  LQDFIEKKKKSVCVRSDARLEFTGYKKLNETIREIVLYYDKR 251
            L++F  K +KS   R+DA  EF G + +N+ + +I+   DKR
Sbjct: 1376 LEEFGAKIEKS---RNDAVAEFAGVEGINQRLDDIIDAQDKR 1414


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 173 SLIIVFSYIC*SFVLCLVNLLIICSV 250
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 173 SLIIVFSYIC*SFVLCLVNLLIICSV 250
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 81  WRAHASRNQEPIRRITHFV 25
           WR H + N +P RR T+FV
Sbjct: 357 WRYHLATNWKPPRRYTYFV 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,078,960
Number of Sequences: 27780
Number of extensions: 164648
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)