Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    25   0.29 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   0.67 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.2  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 8   HELACHTKCVMRLI 49
           H+L C+T C+M+L+
Sbjct: 63  HDLQCYTTCIMKLL 76


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 181 NERNARSVRGFVADCRRSSPASPAITRPRVGS*LARARITQSGANQAHNAFR 26
           N  +A+    F   CR  SP++P+ITR  + S   R      G N+    FR
Sbjct: 317 NVMSAKYRNAFKETCR-CSPSNPSITRTGLSS--VRDSSIICGGNKRSQVFR 365


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 250 IVCRNIELFLVLFRLIFYIQ*TPVVRRSG 336
           I C  I   + +  L+F+ + TPVVR SG
Sbjct: 522 ISCLGIVATMAVACLLFHHRDTPVVRASG 550


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 250 IVCRNIELFLVLFRLIFYIQ*TPVVRRSG 336
           I C  I   + +  L+F+ + TPVVR SG
Sbjct: 612 ISCLGIVATMAVACLLFHHRDTPVVRASG 640


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 247 CIVCRNIELFLVLFRLIFYI 306
           C VC++I     L+RL  Y+
Sbjct: 25  CFVCKDITSTSALYRLKLYL 44


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +2

Query: 191 SYIC*SFVLCLVNLLIICSVS 253
           S++    +LC  ++L +C++S
Sbjct: 113 SWVSLDILLCTASILSLCAIS 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,607
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)