Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0440
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20310.1 68418.m02417 hypothetical protein                          29   1.9  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   4.4  
At5g06040.1 68418.m00669 self-incompatibility protein-related          27   5.9  
At5g40220.1 68418.m04880 MADS-box family protein contains Pfam p...    27   7.7  
At5g06030.1 68418.m00668 self-incompatibility protein-related si...    27   7.7  

>At5g20310.1 68418.m02417 hypothetical protein
          Length = 394

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 22  SHEMRYAPDWLLIA*CVRAPIRSQRAAA--LSQVTPGCCAGSPPQS 153
           S+ MR+APD+  +    +  + S RAA   L QV P   +G+ P S
Sbjct: 138 SNVMRWAPDFCTVLVLSKGRLSSVRAATRPLPQVLPSSSSGTAPLS 183


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  VRAPIRSQRAAALSQVTPGCCAGSPPQSLVLIA 168
           V++P+ S  A+   Q       G PPQSL+LIA
Sbjct: 69  VKSPVVSGAASGSGQYFVDLRIGQPPQSLLLIA 101


>At5g06040.1 68418.m00669 self-incompatibility protein-related 
          Length = 111

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 173 SLIIVFSYIC*SFVLCLVNLLIICSVSFVV 262
           S+I + SY+C  F++ +V + +ICS++  +
Sbjct: 5   SIINLNSYVCSIFIMSIVVISLICSLALQI 34


>At5g40220.1 68418.m04880 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL43
          Length = 324

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 424 RYEIISHATSFNL*FNLQDFIEKKKKSVCVRSDARLEFTGYKKLN 290
           RY  ++ A       NL  F+ KKKK+  +++  +   T  KK+N
Sbjct: 70  RYSQLNEALRRKKSVNLHGFLNKKKKNKGLKNTDKKRKTSLKKVN 114


>At5g06030.1 68418.m00668 self-incompatibility protein-related
           simlar to self-incompatibility [Papaver rhoeas]
           GI:3097260
          Length = 150

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 173 SLIIVFSYIC*SFVLCLVNLLIICS 247
           S I ++SY+C  F++ +V + +ICS
Sbjct: 5   SKINLYSYVCSIFIMSIVVISLICS 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,311
Number of Sequences: 28952
Number of extensions: 139025
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)