Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0436
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.86 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   1.1  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    27   1.1  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   1.5  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    27   2.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   4.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.1  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   8.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   8.0  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   8.0  

>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 437 PSKSPATXNVRNAGTSS 487
           PS SP+T NV NA TSS
Sbjct: 214 PSSSPSTTNVSNASTSS 230


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +2

Query: 272  ATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKN 409
            +T+ + SR + +L + +  ++E+N  + + +  L  +KS    L+N
Sbjct: 1314 STSSDASRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLEN 1359


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 278 AEELSRQREQLQNTDRRLDEINTNLNYSQKHL 373
           A+ +S QRE +Q  D   D+I +N+  +Q+ +
Sbjct: 246 AQMVSEQRETVQRIDMHTDDIVSNIGSAQREI 277


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 115 KHSKQISLMEVILQNWNVNAKL 180
           K+SKQI ++E  +QNW  +A+L
Sbjct: 636 KNSKQIQVVERKIQNWRKSAQL 657


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 126 ANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRD 254
           AN+    HI ELE + + + +  R + QR    +T+ I LLR+
Sbjct: 358 ANEKDAAHITELETKLKELHEQNRRL-QRQKSLATQEIDLLRE 399


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 200 FSLCLDHSLA-LTFQFCNMTSIRLICLLCL 114
           +SL   HSL  LTFQ+ ++ S+    LLC+
Sbjct: 652 YSLIFSHSLLDLTFQYVDIASLLSQFLLCV 681


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 149 YCRTGTSTPSYDPNTK 196
           Y RT  + PSY+PNT+
Sbjct: 183 YIRTQKAQPSYNPNTR 198


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 451  WTFRWCLITFSGNIILQTIKYRLY 380
            W    CL++F G+  L+ + Y +Y
Sbjct: 974  WILFQCLLSFGGDDFLKVVAYMVY 997


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 222 SSTRSIGLLRDLNKLVLQRPKSFPDNVNSYRTQTGDLMRLT 344
           SS +SI L+  L    L+   +FPD +  Y    GD+  LT
Sbjct: 85  SSVQSIVLIC-LGYTCLKEVNAFPDKLFGYSVVAGDIYALT 124


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
 Frame = +2

Query: 116 NTASK*ALWRSYCRTGTSTPSYDPNTKRNRTTDNRFI---NEKYRIAS*SEQI--GIATA 280
           N ++   +WR      TS  +Y+P T    T D  ++   N K  I     ++  G    
Sbjct: 66  NASNGDVIWRQSIAPETSQLNYNPVTNFIITVDKDYLYIWNSKNGILDRKIELADGKGKL 125

Query: 281 EELSRQREQLQNTDRRLDEINTNLNYS-----QKHLNGIKSVFYGLKNYISGKSD 430
            E+++    L    R+  E++   ++S        L+ I  + Y  KNY+  K D
Sbjct: 126 FEVNKGFVYLNPHTRKFIELDLQASFSISIERDLQLDAISFLTYAEKNYVLFKRD 180


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/65 (18%), Positives = 29/65 (44%)
 Frame = +2

Query: 158 TGTSTPSYDPNTKRNRTTDNRFINEKYRIAS*SEQIGIATAEELSRQREQLQNTDRRLDE 337
           T  +  + D  +     T    I ++YR++  S ++ +    EL  +  ++      ++E
Sbjct: 664 TSQNVETNDKESNSESETLYHLIYDRYRVSLESARLLLGPLNELKNESNKINEEYYLMNE 723

Query: 338 INTNL 352
           +NT +
Sbjct: 724 LNTEI 728


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 279 PKSFPDNVNSYRTQTGDLM 335
           P S  D+ NSYR   GDL+
Sbjct: 431 PSSSRDSFNSYRRDLGDLL 449


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 227 NEKYRIAS*SEQIGIATAEELSRQREQLQNTDRRLDEINTNL-NYSQKHLN 376
           N+ Y IA  +  IG++  +ELS +   +     R  E  T L  +S+ H N
Sbjct: 5   NKIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSN 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,682
Number of Sequences: 5004
Number of extensions: 38219
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)