Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0436
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 30 0.86
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 30 1.1
11_06_0427 + 23378527-23378880 29 1.5
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 29 2.6
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 4.6
03_05_0799 + 27809301-27811550 27 6.0
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 6.0
02_02_0263 - 8400488-8400913,8401011-8401481,8401581-8401843,840... 27 6.0
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 27 8.0
02_05_1146 - 34440647-34441674,34442138-34443896 27 8.0
>07_03_1434 +
26529043-26529927,26530385-26530742,26530820-26531007,
26531082-26531271,26531343-26531447,26531521-26531597,
26531628-26531972
Length = 715
Score = 30.3 bits (65), Expect = 0.86
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +3
Query: 102 SRIPQTQQANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDLNKLVLQRP 281
++I Q ++ + AEL RQR + + +E+E R I S + L+ +NKL R
Sbjct: 544 AKISQLEKQIQTLENDKAELARQRDSAL---KEVEDRKIKSQAQFDVLVGKINKLEGARD 600
Query: 282 KS-FPDNVNSYRTQTG---DLMRLTPI*TIVKNI 371
K+ F +N S D +R+ P T KNI
Sbjct: 601 KAMFFNNAGSSTLDAAEIFDKLRVAPY-TYFKNI 633
>03_05_0229 - 22142255-22142344,22142471-22142527,22142621-22142705,
22143552-22143677,22143750-22143793,22143877-22143999,
22144078-22144216,22148795-22151292
Length = 1053
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 218 RFINEKYRIAS*SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFY 397
+FI ++ + + ++GI AEEL LQ++++ +DE+ LN ++G+
Sbjct: 972 KFIGDRQVLLDAARKVGIEGAEEL------LQDSNKGVDEVKEELNKYSSGISGVPHFVI 1025
Query: 398 GLKNYISG 421
K +SG
Sbjct: 1026 NGKFQLSG 1033
>11_06_0427 + 23378527-23378880
Length = 117
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 159 LERQRQAMIQTQREIEQRTIDSSTRSIGLLRDLN 260
L++ R + + + E R D+ TR++GL+R+LN
Sbjct: 34 LDQNRMLINEINQNHESRAPDNLTRNVGLIRELN 67
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 225 STRSIGLLRDLNKLVLQRPKSFPDNVNSYRTQ 320
S+ S +LRD N+L+ Q + + VNS R Q
Sbjct: 798 SSESFDILRDANELLKQEVQKLKEEVNSLRQQ 829
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 284 ELSRQREQLQNTDRRLDEINTNLNYSQKHLNG-IKSVFYGLKNYISGK 424
EL RQ+ QL+N + +L++ N+ L+ ++ L ++ + Y N + K
Sbjct: 413 ELERQKSQLENQNWQLEQQNSRLSSEKRDLESRVRRLGYENTNLLDEK 460
>03_05_0799 + 27809301-27811550
Length = 749
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 PQTQQANKPYGGHIAELERQRQAMIQTQREIEQRTI-DSSTRSIGLL 248
P+ ++ P H+A QR+ QT R + R + S+ R+ G++
Sbjct: 582 PRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARASGVV 628
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 281 EELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIK 385
E+L +QR++ + +LDE T+L K LN K
Sbjct: 499 EDLRKQRQKFEEEWEQLDEKRTHLEEEAKKLNNEK 533
>02_02_0263 -
8400488-8400913,8401011-8401481,8401581-8401843,
8401964-8402225
Length = 473
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 338 INTNLNYSQKHLNGIKSVFYGL 403
INTN N HL G+ SVF+ L
Sbjct: 400 INTNANAFVSHLAGVDSVFHAL 421
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 153 AELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDLNKLVLQRPKSFPDNVNSYRTQTG 326
+E+ER RQAM + + + S + I L ++ ++L+ +R + + + +RT+ G
Sbjct: 226 SEIERLRQAMERQMEQSMLKLRQSEEKVISLSKEKDQLLKERDAALQE-AHMWRTELG 282
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 156 LQYDLHKAYLLAVFEVFLTGSDLQIRYHRRRHFRIG 49
L DL KA + V F+TG DL + Y +++ G
Sbjct: 338 LAADLVKALFIEVPFTFMTGEDLHLSYQLQKYMGAG 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,567
Number of Sequences: 37544
Number of extensions: 206537
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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