Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0436
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022) 47 7e-06
SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57) 34 0.071
SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53) 34 0.071
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1) 29 2.0
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 29 2.0
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 2.7
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13) 28 4.7
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 28 4.7
SB_26402| Best HMM Match : K-box (HMM E-Value=1) 27 6.2
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 27 6.2
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22) 27 8.2
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022)
Length = 215
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = +2
Query: 254 SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQ 433
S + I TAEEL Q EQL T++ LD I+ ++ + +++ +KS++ + NY Q
Sbjct: 57 SHDVAIKTAEELQYQGEQLDRTEKNLDHIHNDMAVANRNIKSMKSIWGTMTNYFKKAPKQ 116
Query: 434 TPSKS 448
T +++
Sbjct: 117 TVTEN 121
>SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57)
Length = 281
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 254 SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIK 385
S+ GI T + Q EQL + LD+IN ++ ++++L G++
Sbjct: 226 SQDTGIKTMVMIDEQGEQLDRVEEGLDQINADMKEAERNLTGME 269
>SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53)
Length = 56
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 254 SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIK 385
S+ GI T + Q EQL + LD+IN ++ ++++L G++
Sbjct: 1 SQDTGIKTMVMIDEQGEQLDRVEEGLDQINADMKEAERNLTGME 44
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -3
Query: 215 CPLFDFSLCLDHSLA--LTFQFCNMTSIRLICLLCLRYS*PEAIYKFXXXXXXXXXXXXX 42
CPL CL ++ L+ ++C + S+R LL +RY P ++
Sbjct: 497 CPLLSVRYCLSVTVCPLLSVRYCPLLSVRYCPLLSVRYC-PLLSVQYCLSITVCPSLSVC 555
Query: 41 ICEIFMPRHCFS 6
C + R+C S
Sbjct: 556 YCPLLSVRYCLS 567
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = -3
Query: 218 YCPLFDFSLCLDHSLALTFQFCNMTSIRLICLLCLRYS*PEAIYKFXXXXXXXXXXXXXI 39
YCPL C L+ ++C + S+R LL +RY P ++ +
Sbjct: 278 YCPLLSVRYCP----LLSVRYCQLLSVRYCPLLSVRYC-PLLSVRYCPLLYVHYCLSVTV 332
Query: 38 CEIFMPRHCFS 6
C + R+C S
Sbjct: 333 CLLLSVRYCLS 343
>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
Length = 579
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Frame = +2
Query: 212 DNRFINEKYRIAS*SEQI------GIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHL 373
+ RF N K + S+++ G+ L + + LQ T ++ I T K +
Sbjct: 121 EKRFDNRKKAVTDKSKELDKKIQEGLDEKNALEKLGDALQTTWNEIERIVTLQREILKAV 180
Query: 374 NGIKSVFYGLKNYISGKSDQTPSKSPATXNVRNAGTSS 487
N V+ LKN I K+P ++ NAGT +
Sbjct: 181 N--PRVYVALKNRIDDMKIYKSLKAPKASSIFNAGTKA 216
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 242 IAS*SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVF 394
+AS E+I I T EE++ +++L+ D + E+N NL + + SVF
Sbjct: 1055 VASKDEKITILT-EEITELKQELKKKDGIISELNDNLTSFEDEHDSEVSVF 1104
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 281 EELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSPATX 460
EEL R QL+ ++ L S + +++ LK++I DQ+ SKS
Sbjct: 363 EELIATRVQLEEKLENSAHVHDQLEESHRRSMDLETEIENLKSHIRQLEDQSYSKSAQVE 422
Query: 461 NVRN 472
N+++
Sbjct: 423 NLKH 426
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 189 TQREIEQRTIDSSTRSIGLLRDLNKLVLQRPKSFPDN 299
+ REIEQR DS + S G +R L K + R K + N
Sbjct: 177 SSREIEQRISDSDSGSEGPVRQLGKPGMDRAKMWCRN 213
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 194 KRNRTTDNRFINEKYRIAS*SEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHL 373
KR + +N+K + SE+ I AEEL+++ + Q T ++ + N+ +++ L
Sbjct: 782 KRKAEELEKSLNDKNLKLAASEEKVIELAEELAKRLKLEQETAEWIEGVEGNMERTERDL 841
Query: 374 NGIKS 388
+ KS
Sbjct: 842 SSAKS 846
>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 120 QQANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLL 248
Q NK Y G + + Q + RE+E+ + D++ +S+G+L
Sbjct: 523 QTPNKAYNGTNSRVYYQTPVEMFLGREVEKNSADTTRKSVGVL 565
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 275 TAEELSRQREQLQNTDRRLDEINTN-LNYSQK 367
TA+EL REQLQNT L E L Y +K
Sbjct: 1118 TAQELRLSREQLQNTHAELMEARRELLRYQRK 1149
>SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13)
Length = 751
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 156 LQYDLHKAYLLAVFEVFLTGSDLQIRYHRRRHFRIGCS 43
+ YDLH +Y LAV DL++ Y R + +G S
Sbjct: 218 VSYDLHVSYDLAVSYDLRVSYDLRVSYDLRVSYDLGVS 255
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +2
Query: 146 SYCRTGTSTPSYDPNTKRNRTTDNRFINEKYRIAS*SEQIGIATAEELSRQREQLQNTDR 325
+Y GTS TKR R +D R + +Q+ A + R + L N R
Sbjct: 798 AYALQGTSQIIARALTKRLRPSDESSRESNERPSKGDQQVATALQRPVWRGYKMLPNDVR 857
Query: 326 RLDEINTNLNYSQKH 370
+ EI T++ + H
Sbjct: 858 KDPEILTSMRREESH 872
>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
Length = 166
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 257 EQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQK 367
+Q +++ ++QL DRR++E+N+ L S+K
Sbjct: 86 KQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKK 122
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 107 NTSNTASK*ALWRSYCRTGTSTPSYDPNTKRNRTTDNRFINEKYRIAS*SE 259
N S K W +CR ++T ++ N + R+ NR+I+ R AS E
Sbjct: 126 NRSPHVPKSGPWIIHCRQSSATSNFQLNLLQCRSWQNRYISCDRRDASSGE 176
>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
Length = 1043
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 194 KRNRTTDNRFINEKYRIAS*SEQIGIATAEELSRQREQLQNTDRRLD 334
KRNR +R K++ IG+ +++ RQRE L+ R L+
Sbjct: 60 KRNRALKDRAAKLKHKF------IGLQKQQDIKRQRETLEREQRELE 100
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -3
Query: 323 CLCSVAVHVVGKALRPLQYQFVQITKQSDTSR**IYCPLFDFSLCLDHS---LALTFQFC 153
CLC++ + + +LR L + I S + R C F+L L L F F
Sbjct: 1849 CLCAICIFALSVSLRYLYLCAICIFALSVSLRYLYLCAFCIFALYLSLRFLYLCAIFVFA 1908
Query: 152 NMTSIRLICL 123
S+R ICL
Sbjct: 1909 LSVSLRYICL 1918
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,905
Number of Sequences: 59808
Number of extensions: 257158
Number of successful extensions: 886
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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