Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0428
         (475 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z5M4 Cluster: Pyridoxine kinase, putative; n=4; Plasm...    34   1.8  
UniRef50_UPI0000499D5F Cluster: hypothetical protein 169.t00009;...    33   3.2  
UniRef50_Q8U775 Cluster: ABC transporter, membrane spanning prot...    32   5.6  
UniRef50_Q1FI03 Cluster: Putative uncharacterized protein; n=1; ...    32   7.4  
UniRef50_Q22A03 Cluster: Putative uncharacterized protein; n=1; ...    31   9.8  

>UniRef50_Q4Z5M4 Cluster: Pyridoxine kinase, putative; n=4;
           Plasmodium (Vinckeia)|Rep: Pyridoxine kinase, putative -
           Plasmodium berghei
          Length = 167

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 291 YDSDDQYSFRSLYFGFFHRQNSMICFLYE 377
           Y+ D+++ F  +Y  FF+RQN MICF Y+
Sbjct: 92  YNFDNEHLF--VYVSFFNRQNKMICFKYK 118


>UniRef50_UPI0000499D5F Cluster: hypothetical protein 169.t00009;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 169.t00009 - Entamoeba histolytica HM-1:IMSS
          Length = 468

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 137 LTRQLLER*LASRFIECLTLLVTKKHRSKRCM-KSFIIHGFNYLVYTK 277
           LT  L  R L++ F++CL+LL+T+K   K  + KS ++    Y ++TK
Sbjct: 214 LTLFLNTRPLSNTFVDCLSLLITQKPYCKPLLSKSQLLPTITYFLFTK 261


>UniRef50_Q8U775 Cluster: ABC transporter, membrane spanning
           protein; n=3; Alphaproteobacteria|Rep: ABC transporter,
           membrane spanning protein - Agrobacterium tumefaciens
           (strain C58 / ATCC 33970)
          Length = 561

 Score = 32.3 bits (70), Expect = 5.6
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 113 SNVAIQFELTRQLLER*LASRFIECLTLLVTKKHRSKRCMKSFIIHGFNYLV 268
           S V I   +   LL+R + ++     +L      +S R +KSFI+HGF YLV
Sbjct: 264 SMVMIAISMAALLLQRHILAKRRYASSLTNRPVKQSMRPLKSFIVHGFCYLV 315


>UniRef50_Q1FI03 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 221

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +2

Query: 50  LSSSFEIC*HIPAEVHEKNSTSNVAIQFELTRQLLER*LASRFIECLTLLVTKKHRSKRC 229
           L S F +C H      E+       +Q    ++L+E   +  ++  L + V + H+S+R 
Sbjct: 94  LYSRFSMCIHNDDLTDEEFKKLGEKVQNLYAKELIEENPSDEYLMNLAVEVAEYHKSERK 153

Query: 230 MKSFIIHGFNYLVYTKQ 280
           +KS+ I   N +V  K+
Sbjct: 154 IKSYTIDSGNSIVTWKE 170


>UniRef50_Q22A03 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2652

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 219  LSVV*KVLSFTVLTIWFIPNNRDLYDSDDQYSFR----SLYFGFFHRQNS 356
            +S+   V+ + VL  +  P N++LY++ D+YS      S+YFGF    N+
Sbjct: 2387 MSIFFLVVVYGVLLFFVKPYNKELYNTIDKYSMAVLCLSIYFGFIAYYNN 2436


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,325,071
Number of Sequences: 1657284
Number of extensions: 7226274
Number of successful extensions: 12861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12861
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)