Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0428
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   5.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   5.8  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 VTKKHRSKRCMKSFIIHGFNYLV 268
           +  K R  +CM  + + GF YLV
Sbjct: 117 IRAKKRWSQCMYMYFLLGFRYLV 139


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 VTKKHRSKRCMKSFIIHGFNYLV 268
           +  K R  +CM  + + GF YLV
Sbjct: 431 IRAKKRWSQCMYMYFLLGFRYLV 453


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 291 YDSDDQYSFRSLYFGFFHRQN 353
           YD++  Y F    F F ++ N
Sbjct: 198 YDTESSYQFNDPQFNFNYQYN 218


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 291 YDSDDQYSFRSLYFGFFHRQN 353
           YD++  Y F    F F ++ N
Sbjct: 218 YDTESSYQFNDPQFNFNYQYN 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,263
Number of Sequences: 336
Number of extensions: 1976
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)