Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0428
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    29   0.36 
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   5.9  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 LYDSDDQYSFRSLYFGFFHRQNSMICFLYEGL 383
           +Y+ DDQ +   L F  F R NS++ F+Y  +
Sbjct: 228 VYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNV 259


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 391 YTNSPSYKKQIMEFXRWKKP 332
           Y + P Y K++ E  RW  P
Sbjct: 219 YEDDPEYNKELKERSRWNDP 238


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 470 QSDTPHSLHNRPRSMGTXSRQY 405
           Q  T HS+H R RS    S+Q+
Sbjct: 72  QQRTQHSIHRRERSSSGASQQF 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,901
Number of Sequences: 5004
Number of extensions: 33708
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)