Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0428
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          29   2.6  
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)          28   3.4  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   4.5  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   4.5  
SB_24173| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 223 ALYEKFYHSRF*LFGLYQTTETSMIVMINT 312
           ALYE +Y  R  +FG Y   +  + ++INT
Sbjct: 85  ALYEYYYKGRKNVFGRYSDRKQRVFILINT 114


>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
          Length = 522

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 LTIWFIPNNRDLYDSDDQYSFRSLYFGFFHR 347
           +T+ F+P+N+D+YD    ++ R  Y+ +  R
Sbjct: 489 VTVAFLPSNQDVYDERPFFNRRQHYYPYIPR 519


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 294 DSDDQYSFRSLYFGFFHRQNSMICFLYEGL 383
           D DD+Y    LY  FFH+ +  +C ++E L
Sbjct: 719 DPDDKYHCLRLYRHFFHKNH--LCLVFESL 746


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 267 FIPNNRDLYDSDDQYSFRSLYFGFFH 344
           F+PN R L + +D   F +++  F+H
Sbjct: 7   FVPNTRTLLEKEDDLEFPNVFRRFYH 32


>SB_24173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 237 VLSFTVLTIWFIPNNRDLYDSDDQYSFRSLYFGFFHRQ 350
           +LSF  LT W  P NR L     + S R LY  F HR+
Sbjct: 6   LLSFDRLTTWLGPPNRRLVTWSRKGSVR-LYNSFSHRK 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,913
Number of Sequences: 59808
Number of extensions: 235354
Number of successful extensions: 359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)