Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0428
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical
           protein H12C20.2b protein.
          Length = 77

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 297 YHRGLCCLV*TK*LKP*MIKLFIQRLDLCFLVTSN--VKHSMNR 172
           +HR  C L+ +  L P ++KL+      C LV  N  V    NR
Sbjct: 22  FHRRQCSLLFSSVLTPELLKLYFNSTGCCQLVKCNSAVNRQFNR 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,270
Number of Sequences: 27780
Number of extensions: 181629
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)