Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004D8CBC Cluster: PCLO_HUMAN Isoform 3 of Q9Y6V0 -...    35   0.82 
UniRef50_A0BPQ9 Cluster: Chromosome undetermined scaffold_12, wh...    33   2.5  

>UniRef50_UPI00004D8CBC Cluster: PCLO_HUMAN Isoform 3 of Q9Y6V0 - Homo
            sapiens (Human); n=3; Xenopus tropicalis|Rep: PCLO_HUMAN
            Isoform 3 of Q9Y6V0 - Homo sapiens (Human) - Xenopus
            tropicalis
          Length = 3266

 Score = 35.1 bits (77), Expect = 0.82
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 308  HIQICFVNFQHSTIKLQKTEDFATNIKLILSVEKFSRFFPDSPLNP*SPH 457
            H+    VN Q ST   QKT+  + + ++ L++   + F P SP +P SPH
Sbjct: 1336 HVSDHPVNLQKSTEAQQKTKAQSISSRMTLNLTTSTEFRPQSPTSPLSPH 1385


>UniRef50_A0BPQ9 Cluster: Chromosome undetermined scaffold_12, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_12,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 371

 Score = 33.5 bits (73), Expect = 2.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 64  SPKTTDFYMYFYLIKYIKTNNN*DL 138
           +PK  DFY YF + KY+ T+NN +L
Sbjct: 50  TPKEDDFYTYFIIEKYLPTDNNLEL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,463,843
Number of Sequences: 1657284
Number of extensions: 7295696
Number of successful extensions: 14446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14446
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)