Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   5.9  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   7.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  

>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 411 NFSTLNISFIFVAKSSVFCSL 349
           +F+ L ISF+ + KS  FC L
Sbjct: 10  SFAILRISFLSITKSIKFCKL 30


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 408 FSTLNISFIFVAKSSVFCSLI 346
           + TL++ +IF A  SVFC L+
Sbjct: 257 YPTLDLIYIFSALMSVFCLLL 277


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 344 TIKLQKTEDFATNIKLILSVEKFSRFFPDSPLNP 445
           TIK+ K +DF  ++K ++   + S   P  PL+P
Sbjct: 511 TIKV-KVKDFVMSMKRMIPSSERSSISPSKPLSP 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,531
Number of Sequences: 5004
Number of extensions: 34821
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)