Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    30   0.85 
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373...    27   7.9  

>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 284 YKLAAIIMHIQICFVNFQHSTIKLQKTEDFATNIKLILSVE 406
           Y +  +  H + C   F+H  + L  T  + T +K++ SVE
Sbjct: 414 YSIPLVAYHEEQCLTLFEHPLVDLLHTIHYETKVKVVPSVE 454


>10_08_0511 +
           18435745-18436499,18436624-18436742,18436788-18437372,
           18438534-18438667,18439128-18439148,18439656-18439739,
           18439832-18440077,18440763-18440925,18441024-18441066,
           18441392-18441773,18442212-18442267,18442351-18442417,
           18442542-18442721
          Length = 944

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 420 NRENFSTLNISFIFVAKSSVF 358
           NR NFS L +S  F+ K+SVF
Sbjct: 705 NRTNFSDLLVSHWFIIKASVF 725


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,291,359
Number of Sequences: 37544
Number of extensions: 166326
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)