Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p pro...    28   7.6  
AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB...    28   7.6  

>AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p
           protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 254 HRKLI*NAIFYKLAAIIMHIQICFVNFQHSTIK--LQKTEDFATNIKLILSVEKF 412
           HR ++  A+FY L  +I     CF+      IK    +T   AT I L++ V  F
Sbjct: 61  HRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETRLIATIIVLVMMVLTF 115


>AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB
           protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 254 HRKLI*NAIFYKLAAIIMHIQICFVNFQHSTIK--LQKTEDFATNIKLILSVEKF 412
           HR ++  A+FY L  +I     CF+      IK    +T   AT I L++ V  F
Sbjct: 61  HRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETRLIATIIVLVMMVLTF 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,262,441
Number of Sequences: 53049
Number of extensions: 311301
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)