Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-1|CAB03158.1|  667|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U41007-1|AAA82264.1|  326|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z81095-1|CAB03158.1|  667|Caenorhabditis elegans Hypothetical
           protein F59F4.1 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 92  YM*KSVVFGDIGDALGINNNEKG 24
           Y  K +  GDIG  LGIN N+ G
Sbjct: 226 YPLKGIRLGDIGPKLGINGNDNG 248


>U41007-1|AAA82264.1|  326|Caenorhabditis elegans Hypothetical
           protein C33H5.7 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  AQLTPFSLLFIPKASPISPKTTDFYMYFY 99
           AQ  P    F P++S I   ++D Y+YFY
Sbjct: 244 AQKIPLMASFTPESSHIMVGSSDGYIYFY 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,951,045
Number of Sequences: 27780
Number of extensions: 182825
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)