Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0424
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46360.1 68416.m05021 hypothetical protein                          29   2.1  
At1g67290.1 68414.m07658 glyoxal oxidase-related contains simila...    28   2.8  
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains...    27   6.5  
At4g26180.1 68417.m03768 mitochondrial substrate carrier family ...    27   8.7  

>At3g46360.1 68416.m05021 hypothetical protein 
          Length = 197

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 1   NSARAQLTPFSLLFIPKASPISPKTTDFYMYFYLIKYIKTNNN*DLPLIYMLVQT 165
           +SA    +P   +F+P AS      + F +   L+  +  N+  D P I MLV T
Sbjct: 115 SSAMVMASPCPFVFVPDASSPVVLRSSFVVKVLLVSVLVVNSLVDGPWIVMLVAT 169


>At1g67290.1 68414.m07658 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 615

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 342 LLLNYKKRKILQRI*NLY*ASKNFPG-----FFPIRLSIPNRPILP 464
           +LL+ K  K+L+    L   ++N+PG       PIRL + N  I+P
Sbjct: 300 ILLSPKTNKVLKEFPQLPGGARNYPGSASSALLPIRLYVQNPAIIP 345


>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
           weak hit to Pfam profile PF00023: Ankyrin repeat
          Length = 497

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 414 PGFFPIRLSIPNRPILPVLESF 479
           PG FP++LSIP  P + V+ +F
Sbjct: 368 PGTFPVKLSIPVVPTVKVVITF 389


>At4g26180.1 68417.m03768 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 325

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 132 SVVIGFNVFDQIKIHVKI 79
           SV IGF V+D +K+H+++
Sbjct: 288 SVAIGFTVYDIMKLHLRV 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,090,647
Number of Sequences: 28952
Number of extensions: 158043
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)