Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0423
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   7.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 141 RLWHCLGH*RQL*HLEMLRAE 79
           R WH LG   Q  + E+ R E
Sbjct: 515 RRWHALGREEQAKYYELARRE 535


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 141 RLWHCLGH*RQL*HLEMLRAE 79
           R WH LG   Q  + E+ R E
Sbjct: 407 RRWHALGREEQAKYYELARRE 427


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 20   FRRTCSSSNWCWRR 61
            F+  C  +NW W R
Sbjct: 1398 FKIVCYFTNWAWYR 1411



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 20   FRRTCSSSNWCWRR 61
            F+  C  +NW W R
Sbjct: 1823 FKVVCYFTNWAWYR 1836


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 238 SPSTTEL*SATATPP 194
           SPSTT+  S   TPP
Sbjct: 134 SPSTTDDLSTNPTPP 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,251
Number of Sequences: 336
Number of extensions: 1202
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)