Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0423
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    31   0.062
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    31   0.062
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    29   0.33 
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   1.0  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   2.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   2.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.1  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    26   3.1  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   4.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   4.1  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   5.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    25   7.1  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    24   9.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   9.4  

>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +2

Query: 248 KNAIDNFGRIDILINNAG 301
           + AI +FGRID+L+NNAG
Sbjct: 34  EKAISHFGRIDVLLNNAG 51


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +2

Query: 248 KNAIDNFGRIDILINNAG 301
           + AI +FGRID+L+NNAG
Sbjct: 34  EKAISHFGRIDVLLNNAG 51


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 242 ANKNAIDNFGRIDILINNAGILRDKSXTKMTXXDXDLIQXVHLKG 376
           A +  I   G ID+LINNAG+  D    +++    D    + L+G
Sbjct: 63  AIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRG 107


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 ANKNAIDNFGRIDILINNAG 301
           A K+A   FG +DI+INNAG
Sbjct: 65  AFKDAKRRFGNVDIVINNAG 84


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 277 NPPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFP 146
           N P  I    I   P+   + + TA PPLS+ ++   +AA  FP
Sbjct: 226 NTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHFP 269


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -2

Query: 334 SHFSXALITENASIVDKNIN----PPKIINXVFISFSPSTTEL*SATATPPLSLISLTTA 167
           S  S +  T   S+   NI     PP   +    +  P TT + + T  PP + ++ TT 
Sbjct: 48  SFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTT 107

Query: 166 SA 161
           +A
Sbjct: 108 TA 109


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 247 ISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 98
           +S + STT   ++T++ PLS ++ TTA++A   P  S+    + + +  P
Sbjct: 327 VSSANSTTA--TSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 374



 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -2

Query: 283 NINPPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTL 104
           ++ P   ++   +S + STT   SA++TP LS ++ TTA++A   P  S+    + + + 
Sbjct: 413 SVLPTSSVSSTPLSSANSTTAT-SASSTP-LSSVNSTTATSASSTPLSSVNSTTATSASS 470

Query: 103 AP 98
            P
Sbjct: 471 TP 472


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 236 GEAN-KNAIDNFGRIDILINNAGIL 307
           G+A+ + AI  FG++D +I NAG+L
Sbjct: 65  GKASIETAIKKFGKLDSVILNAGVL 89


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 331 HFSXALITENASIVDKNINPPKIINXVFISFSPSTTEL*SATATPPLS 188
           H S A  T   S +  NI+P   +    +S SPS T +      P +S
Sbjct: 727 HLSTAFSTAPVSTIVSNISPLPTVAPPNVSGSPSETPISKPEKVPVVS 774


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 244 SFSPSTTEL*SATATPPLSLISLTTASAALDFPA 143
           S S S   + S+++TP +S I  TT+S + D P+
Sbjct: 114 SNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPS 147


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 295 IVDKNIN-PPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSL 134
           I D+N N  P I++ + I F+ +  E   A  +   S+++LTT  +     AP+L
Sbjct: 102 IADQNNNLTPAILSVLSILFNTAVKERQHARLSILTSVVTLTTRYSLFSTLAPNL 156


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 244 SFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTL 104
           ++S S   L ++  +P    IS T +S++    +PS+AL  S TTT+
Sbjct: 290 TYSTSGPNLTTSNTSPQ---ISSTISSSSFIVESPSVALSTSSTTTI 333


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 208  TATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 98
            T+TPP+   S    SA    PAPS  +P     + AP
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 135 RDGAGKSNAADAVVKEIKDKGGV 203
           +D  GK  A   +  EIK KGGV
Sbjct: 310 KDPMGKQEAIAEIQDEIKQKGGV 332


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 150 KSNAADAVVKEIKDKGGVAVADYNS 224
           K +A  A  +++KDKGGVA   Y +
Sbjct: 393 KGDAKVAWQEKLKDKGGVANTSYTA 417


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  GAKVVVNDLGSARDGAGKSN 158
           GAK+ +   GS ++G G+S+
Sbjct: 222 GAKIAIRGKGSVKEGKGRSD 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,688
Number of Sequences: 5004
Number of extensions: 20036
Number of successful extensions: 84
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)