Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0423
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 80 1e-15
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 34 0.047
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 31 0.33
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 31 0.58
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 30 1.0
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_28572| Best HMM Match : RVT_1 (HMM E-Value=2e-20) 30 1.0
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23) 29 1.3
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 29 1.8
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 29 2.3
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 29 2.3
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 28 3.1
SB_26256| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=8.9) 28 4.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 4.1
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_18008| Best HMM Match : Drf_FH1 (HMM E-Value=7.7) 27 5.4
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 27 5.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 27 7.2
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 27 9.5
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) 27 9.5
SB_13269| Best HMM Match : P-II (HMM E-Value=6.8) 27 9.5
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 79.8 bits (188), Expect = 1e-15
Identities = 55/150 (36%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Frame = +3
Query: 3 ARDQLRFDGRVAVVTXXXXXXXXXXXXXXXSRGAKVVVNDLGSARDGAGKS-NAADAVVK 179
A + +RFDGRV +VT RGA VVVNDLG G GKS AAD VV+
Sbjct: 2 AAEPIRFDGRVVLVTGAGNGLGRQYALAFAERGASVVVNDLGGDTKGEGKSGRAADKVVQ 61
Query: 180 EIKDKGGVAVADYNSVVEGEXXXXXXXXXXXXXXFLSTMLAFSVIRAXLK*LXXTXT*FS 359
EI+ KGG AVADYNSV +G+ + ++ L+
Sbjct: 62 EIRAKGGKAVADYNSVEQGDQVVETAIKAFGRIDVVVNNAGILRDKSILRMSELDWDLVQ 121
Query: 360 XSI*KVLFKTTYAAWXTFILLKYGRIVMTS 449
K F T AAW K+GRI+MT+
Sbjct: 122 RVHLKGSFLVTRAAWPHMKKQKFGRIIMTT 151
Score = 64.1 bits (149), Expect = 5e-11
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 230 RGGEANKNAIDNFGRIDILINNAGILRDKSXTKMTXXDXDLIQXVHLKGA 379
+G + + AI FGRID+++NNAGILRDKS +M+ D DL+Q VHLKG+
Sbjct: 79 QGDQVVETAIKAFGRIDVVVNNAGILRDKSILRMSELDWDLVQRVHLKGS 128
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 34.3 bits (75), Expect = 0.047
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = -2
Query: 274 PPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 98
P +I++ + ST EL ++T +S+++L T S + PAPS +LP S T + P
Sbjct: 468 PSEIVSPSISTLHTSTVEL---SSTGNVSMLTLKTNSIPVTSPAPSTSLPASSTLPVLP 523
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 233 GGEANKNAIDNFGRIDILINNAGILRDKSXTKMTXXDXDLIQXVHLKGA 379
G A + I GRID+L+NNAG + M + I V + GA
Sbjct: 103 GALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGA 151
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 30.7 bits (66), Expect = 0.58
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = +2
Query: 263 NFGRIDILINNAGIL 307
+FGR+D+L+NNAGIL
Sbjct: 82 HFGRLDVLVNNAGIL 96
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 239 EANKNAIDNFGRIDILINNAGILRDKSXTK 328
EA + + + ++DIL NNAGI+ +K+ K
Sbjct: 107 EAIRQTVKDHSKLDILCNNAGIIDEKNWPK 136
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 260 DNFGRIDILINNAGILRDKS 319
+ +G +DIL+NNAGIL+ +S
Sbjct: 96 EKYGGLDILVNNAGILKKES 115
>SB_28572| Best HMM Match : RVT_1 (HMM E-Value=2e-20)
Length = 388
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -2
Query: 268 KIINX-VFISFSPSTTEL*S---ATATPPLSLISLTTASAALDFPAPS 137
KI N V ISF P + EL +PPL L+ LTT + L+ P PS
Sbjct: 336 KIYNGLVGISFPPESEELPENHKKFKSPPLPLLFLTTPAYELELPHPS 383
>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
Length = 228
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 NAIDNFGRIDILINNAGILRDKSXT-KMTXXDXDLIQXVHLKGA 379
N +FG D ++NNAG + + ++T + D + V+LKG+
Sbjct: 72 NVCKSFGPPDFVLNNAGFVNQNAPLWEITAEEFDKVVDVNLKGS 115
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 238 SPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPR--SLTTTLAP 98
+P TT + ++T+TP S A + + APS + PR S TTT AP
Sbjct: 8 TPGTTSITTSTSTPSTST---PRAGSTTNTSAPSTSTPRTGSTTTTSAP 53
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 239 EANKNAIDNFGRIDILINNAG 301
E ++ +D+F +IDILINN+G
Sbjct: 118 ELVRSVLDHFNKIDILINNSG 138
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 260 DNFGRIDILINNAGI 304
D FGR+DIL NNAGI
Sbjct: 80 DVFGRLDILCNNAGI 94
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 281 ILINNAGILRDKSXTKMTXXDXDLIQXVHLK 373
IL+N+AGI +D KM D D + V+LK
Sbjct: 276 ILVNSAGIAKDALLLKMKEQDFDDVIDVNLK 306
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/19 (73%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +2
Query: 251 NAI-DNFGRIDILINNAGI 304
NAI + GRIDIL+NNAGI
Sbjct: 76 NAIYEEEGRIDILVNNAGI 94
>SB_26256| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=8.9)
Length = 313
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 214 SATATPPLSLISLTTASAALDFPAPSL-ALPRSLTTTLA 101
S TP S T AS AL+ P+P+L A P S++ T++
Sbjct: 54 SGPTTPGFFTASPTFASLALETPSPTLGAFPFSISPTMS 92
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -2
Query: 325 SXALITENASIVDKNINPPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFP 146
S + IT +++ ++ P + +P TT L +T TP ++ S +TA+ +
Sbjct: 1072 SESSITPGTTVLPESTAAPLTTGASESTVAPGTTVLPESTVTPGTTVSSESTATPLTNLA 1131
Query: 145 APS-LALPRSLTT--TLAPR 95
+ S + L S+++ T APR
Sbjct: 1132 SESTVTLETSISSEGTFAPR 1151
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 235 PSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRS 119
P TT + TA P + + TTA+ P + ALP++
Sbjct: 2238 PETTAVPETTAVPETTAVPETTAAPETTAPPETTALPKT 2276
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 257 IDNFGRIDILINNAGI 304
++ GRID+L+NNAGI
Sbjct: 110 VEKEGRIDVLVNNAGI 125
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 269 GRIDILINNAGILRDKSXTKMT 334
G +DIL+NNAGIL K T
Sbjct: 1298 GDVDILVNNAGILHGKRLLDQT 1319
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 165 DAVVKEIKDKGGVAVADYNSVVEGE 239
D V EI D+GG+ V DY S E E
Sbjct: 1381 DEVAGEIDDEGGLGVGDYGSDSEQE 1405
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -2
Query: 235 PSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAPR 95
P T +ATA PP + ASAA PA + A S TTT P+
Sbjct: 6360 PGTKAGAAATAKPPTA-----AASAAAKIPAKTTAKKTSTTTTTKPK 6401
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 199 PPLSLISLTTASAALDFPAPSLALPRSLTTT 107
PP S+++ T A+ ++D APS P S ++T
Sbjct: 1175 PPTSMLNSTPATVSIDSIAPSPTTPPSSSST 1205
>SB_18008| Best HMM Match : Drf_FH1 (HMM E-Value=7.7)
Length = 339
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 303 MPALLIRISILPKLSXAFLLASPPRRQSC 217
MP+L +R+S KL A+ + S P R SC
Sbjct: 1 MPSLPLRVSYTVKLRVAYPIPSLPLRVSC 29
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 227 RRGGEANK--NAI-DNFGRIDILINNAGILRDKSXTKMTXXD 343
R+ E K NA+ D G + ILINNAG++ K + D
Sbjct: 94 RKKDEVEKVANAVEDQAGNVTILINNAGVVTGKKFLNCSESD 135
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = -2
Query: 313 ITENASIVDKNINPPKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSL 134
+ +++ + PP+ + + +P TTE T P + + TT + +
Sbjct: 3357 VAPESTVAPETTVPPETTDAPETTVAPETTEEPETTVVPETTAVPETTITQETTVAPETT 3416
Query: 133 ALPRSLTTTLAP 98
ALP S T+AP
Sbjct: 3417 ALPES---TVAP 3425
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 248 KNAIDNFGRIDILINNAG 301
K+ + ++GRID L+NN G
Sbjct: 107 KSTLSSYGRIDYLVNNGG 124
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 138 DGAGKSNAADAVVKEIKDKGGVAVADYNSVV 230
DGAGK DA KE+ +G + + N V
Sbjct: 914 DGAGKGEGLDAASKEVACEGKESTDEVNEAV 944
>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
Length = 2279
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 191 VFDFFNNGIRCVGLSGTVSGTA 126
V D F++ + CVG SGT +G A
Sbjct: 2247 VLDEFDDMVMCVGSSGTAAGIA 2268
>SB_13269| Best HMM Match : P-II (HMM E-Value=6.8)
Length = 205
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 191 VFDFFNNGIRCVGLSGTVSGTA 126
V D F++ + CVG SGT +G A
Sbjct: 35 VLDEFDDMVMCVGSSGTAAGIA 56
>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 257 IDNFGRIDILINNAGILRDKSXTK 328
+ G +DI+ NNAGIL ++ +K
Sbjct: 71 VSTHGHLDIVFNNAGILDEERWSK 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,954
Number of Sequences: 59808
Number of extensions: 152981
Number of successful extensions: 659
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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