Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0423
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.12 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 263 NFGRIDILINNAGILRDKSXTKMTXXDXDLIQXVHLKG 376
           N G IDILINNA I  D +       D   I  ++L G
Sbjct: 81  NLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 271 PKIINXVFISFSPSTTEL*SATATPPLSLISLTTASAALDFP 146
           P +IN  F   SPS + L + T    L++  +  A      P
Sbjct: 51  PNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSP 92


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 166 SAALDFPAPSLALPRSLTTT 107
           S  L  PA S +LP ++TTT
Sbjct: 91  SRPLHPPASSTSLPATITTT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,579
Number of Sequences: 438
Number of extensions: 1236
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)