Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0418
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 128 3e-31
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 70 2e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 50 2e-07
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 49 3e-07
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 48 5e-07
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 48 9e-07
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 45 7e-06
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 44 1e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 44 1e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 43 2e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 42 4e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 42 4e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 41 1e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 36 0.004
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 35 0.005
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.016
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 27 1.4
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 2.5
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 5.7
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc... 25 7.5
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 24 9.9
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 24 9.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 24 9.9
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 24 9.9
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 24 9.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 9.9
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 128 bits (310), Expect = 3e-31
Identities = 63/90 (70%), Positives = 73/90 (81%)
Frame = +3
Query: 195 YISQDDRVQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL 374
Y+ + V +G G G+ SALTIQLIQ+HFVDEYDPTIEDSYRK+ IDGE LLD+L
Sbjct: 5 YLREYKLVVVGDGGVGK---SALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVL 61
Query: 375 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNS 464
DTAGQEEYSAMR+QYMRTGEGFLLV+ + S
Sbjct: 62 DTAGQEEYSAMREQYMRTGEGFLLVYNITS 91
Score = 28.7 bits (61), Expect = 0.46
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 199 SRKMTEYKLVVVGAGGVG 252
S + EYKLVVVG GGVG
Sbjct: 3 STYLREYKLVVVGDGGVG 20
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 69.7 bits (163), Expect = 2e-13
Identities = 28/70 (40%), Positives = 49/70 (70%)
Frame = +3
Query: 255 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 434
S+LT+Q ++NHFV+ Y PTIE+++ K + G+ +I+DTAGQ+EYS + ++
Sbjct: 20 SSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIH 79
Query: 435 GFLLVFAVNS 464
G++LV+++ S
Sbjct: 80 GYVLVYSITS 89
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +3
Query: 255 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 434
+ L I N F +Y PT+ D+Y V+I E L + DTAGQE+Y +R +
Sbjct: 17 TCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTD 76
Query: 435 GFLLVFAVNS 464
FL+ F+V S
Sbjct: 77 VFLVCFSVTS 86
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 49.2 bits (112), Expect = 3e-07
Identities = 28/83 (33%), Positives = 45/83 (54%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 395
V +G CG+ S L++ + +F EY PT+ ++Y +DG++ L + DTAGQEE
Sbjct: 12 VVVGDGACGKT--SLLSVFTL-GYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEE 68
Query: 396 YSAMRDQYMRTGEGFLLVFAVNS 464
Y +R L+ FA++S
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDS 91
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 48.4 bits (110), Expect = 5e-07
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 279 QNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 458
+ +F Y+PTI ++Y + +DG + L + DTAGQEEY +R ++ FAV
Sbjct: 35 KGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAV 94
Query: 459 NS 464
+S
Sbjct: 95 DS 96
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 47.6 bits (108), Expect = 9e-07
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 395
V +G CG+ + L I + F + Y PT+ ++Y V +DG L + DTAGQE+
Sbjct: 10 VIVGDGACGK---TCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQED 66
Query: 396 YSAMRDQYMRTGEGFLLVFAVNS 464
Y +R L+ FAV+S
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDS 89
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 44.8 bits (101), Expect = 7e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 395
V +G CG+ + L I + F + Y PT+ ++Y V +DG L + DTAGQE+
Sbjct: 10 VIVGDGACGK---TCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQED 66
Query: 396 YSAMRDQYMRTGEGFLLVFAVNS 464
Y +R L+ F+V++
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDA 89
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 44.0 bits (99), Expect = 1e-05
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +3
Query: 183 KNILYISQDDRVQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETC 359
KN++ I+Q V +G G+ S+L ++ +++ F D + TI ++ Q + ID T
Sbjct: 8 KNVVTINQK-LVLLGDSAVGK---SSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 360 L-LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 458
+ L+I DTAGQE Y ++ Y R ++V+ +
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDI 97
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQE 392
V +G G G+ + L Q + F EY TI D K VV+D + L + DTAGQE
Sbjct: 12 VILGDSGVGK---TCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 393 EYSAMRDQYMRTGEGFLLVFAVNS 464
+ ++ + R + ++V+ VN+
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNN 92
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 43.6 bits (98), Expect = 2e-05
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 IGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEY 398
IG G G+ S L ++ + + + Y TI ++ + ++G+T L I DTAGQE +
Sbjct: 14 IGDSGVGK---SCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70
Query: 399 SAMRDQYMRTGEGFLLVFAV 458
+ Y R G ++V+ V
Sbjct: 71 RTITSSYYRGAHGIIIVYDV 90
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 43.2 bits (97), Expect = 2e-05
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 392
V IG G G+ S L ++ +N F E TI + + +V+D + I DTAGQE
Sbjct: 14 VLIGDSGVGK---SNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 393 EYSAMRDQYMRTGEGFLLVFAV 458
Y A+ Y R G L+V+ +
Sbjct: 71 RYRAITSAYYRGAVGALIVYDI 92
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 42.3 bits (95), Expect = 4e-05
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 222 IGGCGCGRRW*SALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEY 398
+G G G+ +++ Q + F +Y TI D K+V++D + L + DTAGQE +
Sbjct: 14 LGESGVGK---TSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERF 70
Query: 399 SAMRDQYMRTGEGFLLVFAVNS 464
++ + R + +LV+ VN+
Sbjct: 71 QSLGVAFYRGADCCVLVYDVNN 92
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.3 bits (95), Expect = 4e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 IGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEY 398
IG G G+ S L ++ ++ F + TI ++ + + +DG+ L I DTAGQE +
Sbjct: 15 IGDSGVGK---SCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 71
Query: 399 SAMRDQYMRTGEGFLLVFAV 458
+ Y R G LL++ V
Sbjct: 72 RTITTAYYRGAMGILLLYDV 91
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 40.7 bits (91), Expect = 1e-04
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL--DTAGQ 389
V +G GCG+ + L I F + Y PT+ ++Y + + ++++ DTAGQ
Sbjct: 18 VVVGDGGCGK---TCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQ 74
Query: 390 EEYSAMRDQYMRTGEGFLLVFAVN 461
EEY +R LL F+++
Sbjct: 75 EEYDRLRPLSYPNSNVILLCFSID 98
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 35.5 bits (78), Expect = 0.004
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 SALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 431
++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 25 TSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 84
Query: 432 EGFLLVFAVNS 464
++V+ + +
Sbjct: 85 SVAIIVYDITN 95
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 35.1 bits (77), Expect = 0.005
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 216 VQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-----ETCLLDILDT 380
V G G G+ S L + ++N + D+ T+ + +++ G + L I DT
Sbjct: 13 VLAGPSGTGK---SCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 381 AGQEEYSAMRDQYMRTGEGFLLVFAVNS 464
AGQE++ ++ Y R G +LV+ V +
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTN 97
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 33.5 bits (73), Expect = 0.016
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 348 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS 464
GE C ++ DTAGQE+ +RD Y G+ +++F V S
Sbjct: 56 GEICF-NVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTS 93
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 367 SSKHVSPSITTCLRYESSIVGSYSSTK*FCISCIVNADYQRLPHPQPP 224
S++H++ + L YE+ + SY S K + + + L QPP
Sbjct: 224 SNRHINDQLIRLLSYETKLKESYPSLKRIVSNVFDRIEKEILKRVQPP 271
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 402 PNTLPGQPCPGCRVNTSHRRSRLVYGTN 319
P+T P QPC ++ T + R+VY N
Sbjct: 13 PSTKPSQPC---KIGTDFKGERIVYPAN 37
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 255 ITNASRTHNHQFVLGHLARYTK 190
I A R HN Q ++G L ++TK
Sbjct: 436 IDTAGRRHNDQRLMGSLEKFTK 457
>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 24.6 bits (51), Expect = 7.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 238 HPQPPICTRSSCEIYKIFFHTM 173
+ Q P+CT S+CE + H++
Sbjct: 25 YTQTPVCTDSNCEHARFLKHSL 46
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 34 IAFDSNNTLISRFTVTSSVIKHRPRQ 111
I+ S N+++SR + S + H PRQ
Sbjct: 157 ISLKSQNSIVSRTSNPFSCLNHSPRQ 182
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 24.2 bits (50), Expect = 9.9
Identities = 18/77 (23%), Positives = 28/77 (36%)
Frame = +2
Query: 212 PSTNWWLWVREALVIRIDYTADTESLRGRIRSHDRGFVP*TSRDRR*DVFTRHPGHGWPG 391
PST+W LW+ D +L + H+ + ++ D T + + W
Sbjct: 178 PSTSWVLWLDS------DIVETPSTLIQDLAEHNEDVLVANCFQKQGDKLTPYDFNSWVD 231
Query: 392 RVFGDERPIHADRGRIL 442
E H DR IL
Sbjct: 232 SQTAQELASHMDRDEIL 248
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 130 YKCGDSGALFSSAVTLCEKIFCISRKMTEYKLVVV 234
Y G+ G S EKI+ I++ ++EYK+V +
Sbjct: 127 YNLGNGGPAPESVT---EKIYSITKTISEYKMVKI 158
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 390 PGQPCPGCRVNTSHRRSRLVYGTNPLS 310
PG C R+ +R +L+Y T PL+
Sbjct: 946 PGSICYNQRLWRRNRNEKLIYRTRPLA 972
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 176 NVTALENNAPESPHLYYSHLHGCRGLCFITLDVTVKRLINVLLESNAINNTMR 18
N+ + P + + + LH C G C + LD + + V+L +A+ + R
Sbjct: 53 NIEKMSQGHPLNDNDRWGWLHNCGGACAMELD--KESIKGVVLTCSALKRSYR 103
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 312 IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY 419
+ED R++++I TC +L+T E ++ +++
Sbjct: 22 LEDKQRQEIIIIFRTCSRLVLNTIKSETRKSLAEEW 57
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 276 IQNHFVDEYDPTIEDSYRKQVVIDGETCL 362
+Q+ FVD + I D Y + + G CL
Sbjct: 43 LQSTFVDTFRSFINDEYYTVIYLYGSPCL 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,882
Number of Sequences: 5004
Number of extensions: 42853
Number of successful extensions: 147
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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