Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0418
         (464 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    46   5e-07
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            42   1e-05
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    30   0.046
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   1.7  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   4.0  
AY324308-1|AAQ89693.1|  134|Anopheles gambiae insulin-like pepti...    23   4.0  
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    23   5.3  
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    23   6.9  

>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 46.4 bits (105), Expect = 5e-07
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +3

Query: 255 SALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 434
           + + I    + F  EY PT  D+Y   +V+DG    L + DTAGQE+Y  +R       +
Sbjct: 20  TCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLSYPQTD 79

Query: 435 GFLLVFAVNS 464
            FL+ ++V S
Sbjct: 80  VFLICYSVAS 89


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 41.9 bits (94), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +3

Query: 198 ISQDDRVQIGGCGCGRRW*SALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDIL 374
           I Q   V +G    G+   S+L ++ ++  F +  + TI  ++  Q + ID  T   +I 
Sbjct: 22  ICQFKLVLLGESAVGK---SSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIW 78

Query: 375 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNS 464
           DTAGQE Y ++   Y R  +  ++V+ + +
Sbjct: 79  DTAGQERYHSLAPMYYRGAQAAIVVYDIQN 108


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 0.046
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 375 PGCRVNTSHRRSRLVYGTNPLSWDRIRPRS 286
           P CR   + RRSR    T P SW R RP S
Sbjct: 269 PSCRSPPARRRSR---STRPTSWPRSRPTS 295


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 273 LIQNHFVDEYDPTIEDSYRKQVVID-GET---CLLDILDTAGQEEYSAMRDQYMRTGEGF 440
           L++N  + +Y  T  D  R  V  D GE    C L +L    + EYSA  D Y    EGF
Sbjct: 472 LMENSVMKKYT-TKSDQARHYVQYDQGEDRWLCTL-LLKQKFRVEYSAASDAYTHAPEGF 529


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = -2

Query: 385 PAVSRMSSKHVSPSITTCLRYESSIVGSYSSTK*FCISCIVNADYQRLPHPQPPICTRSS 206
           P+VS+ S  H S + ++     +    + S+ + F  S  + AD Q+  +    +    S
Sbjct: 151 PSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSMELTADIQQAANDTNTVEASDS 210

Query: 205 CEIY 194
           C  Y
Sbjct: 211 CNHY 214


>AY324308-1|AAQ89693.1|  134|Anopheles gambiae insulin-like peptide
           2 precursor protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 402 PNTLP-GQPCPGCRVNTSHRRS 340
           P+TLP G P PG  V+   RRS
Sbjct: 90  PDTLPPGFPYPGAGVHRRSRRS 111


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine
           dehydrogenase protein.
          Length = 1325

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 228 GCGCGRRW*SALTIQLIQ-NHFVDEYDPTIE 317
           G GCG+     L  +L Q N FV  YDP+ E
Sbjct: 168 GNGCGQNGNGELDTELFQPNEFV-PYDPSQE 197


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 378 TAGQEEYSAMRDQYMRTGEGFLLVFAVNS 464
           +AGQE+Y  +R       + FL+ F+V S
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVS 29


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,972
Number of Sequences: 2352
Number of extensions: 10670
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)