Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2GQT6 Cluster: Putative uncharacterized protein; n=1; ...    33   2.8  
UniRef50_Q81UM6 Cluster: NAD(P)H dehydrogenase, quinone family; ...    32   4.8  
UniRef50_Q9ZTJ0 Cluster: Disease resistance gene analog PIC15; n...    32   4.8  
UniRef50_Q8TFG4 Cluster: Uncharacterized protein PB18E9.04c prec...    32   4.8  
UniRef50_A7S9G5 Cluster: Predicted protein; n=1; Nematostella ve...    31   8.5  

>UniRef50_Q2GQT6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 833

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 56  DAPEQLPPARRLVHPC*ATPLCTTSTGTRYSSVPATDTLNGLSRS 190
           D P +LPPA     P  A P  T++T    +  PAT   NG   S
Sbjct: 213 DHPPELPPAAASTIPSSAAPAATSATEPAETQTPATPASNGAPAS 257


>UniRef50_Q81UM6 Cluster: NAD(P)H dehydrogenase, quinone family;
           n=8; Bacillus cereus group|Rep: NAD(P)H dehydrogenase,
           quinone family - Bacillus anthracis
          Length = 182

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 311 RXNYTPVDXLVVLVLCNERILKYSLCSIXTGYAQAVPYERKIWRDRLKYQSPVHW 147
           R N T VD +V ++  N ++      +I  GY      ++ +W D + YQ+P++W
Sbjct: 19  RLNKTLVDHMVTVLSENHQV---KTTTIQDGYNIKEEQDKFLWADVVIYQTPIYW 70


>UniRef50_Q9ZTJ0 Cluster: Disease resistance gene analog PIC15;
           n=17; Magnoliophyta|Rep: Disease resistance gene analog
           PIC15 - Zea mays (Maize)
          Length = 310

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35  QKAF--GQHDAPEQLPPARRLVHPC*ATPLCTTSTGTRYSSVPATDTLNGLSRSC 193
           +KAF  G  + PE +   RR+VH C   PL  ++ G   SS         ++ SC
Sbjct: 143 KKAFSRGVQERPELVAIGRRIVHVCKGLPLALSTMGGLMSSKQEAQDWEAIAESC 197


>UniRef50_Q8TFG4 Cluster: Uncharacterized protein PB18E9.04c
           precursor; n=1; Schizosaccharomyces pombe|Rep:
           Uncharacterized protein PB18E9.04c precursor -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 800

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 ATPLCTTSTGTRYSSVPATDTLNGLSRSCVHTEQPVHT 220
           AT  CTTST   Y+S P T +   +S S   T  PV T
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588


>UniRef50_A7S9G5 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 507

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 260 ERILKYSLCSIXTGYAQAVPYERKIWRDRLKY---QSPVHWNILFLYSWC 120
           + +L YS+C I  GY   + Y    ++  L Y     PV++  L  YS C
Sbjct: 251 QHLLSYSICHIPMGYQHLLSYSILYYQHLLSYSICHIPVYYQHLLSYSIC 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,563,425
Number of Sequences: 1657284
Number of extensions: 6459904
Number of successful extensions: 14849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14842
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)