Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.034
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    31   0.11 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   4.0  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   6.9  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   9.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 32.3 bits (70), Expect = 0.034
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 ATPLCTTSTGTRYSSVPATDTLNGLSRSCVHTEQPVHT 220
           AT  CTTST   Y+S P T +   +S S   T  PV T
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588



 Score = 31.1 bits (67), Expect = 0.080
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 98  PC*ATPL----CTTSTGTRYSSVPATDTLNGLSRSCVHTEQPVHT 220
           P  +TPL    CTTST   Y+S P T +   +S S   T  PV T
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 529



 Score = 28.3 bits (60), Expect = 0.56
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 ATPLCTTSTGTRYSSVPATDT 169
           AT  CTTST   Y+S P T T
Sbjct: 446 ATTNCTTSTSVPYTSTPVTST 466



 Score = 27.5 bits (58), Expect = 0.98
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 110 TPLCTTSTGTRYSSVPATDTLNGLSRSCVHTEQPVHTLXQYYIKNISIS 256
           T  CTTST   Y+S P T T    +     T  P +T       N +IS
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVP-YTSTPVTSSNYTIS 576



 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 110 TPLCTTSTGTRYSSVPATDTLNGLSRSCVHTEQP 211
           T  CTTST   Y+S P T T    +     T  P
Sbjct: 424 TTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVP 457



 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 98  PC*ATPL----CTTSTGTRYSSVPATDT 169
           P  +TPL    CTTST   Y+S P T T
Sbjct: 462 PVTSTPLTTTNCTTSTSIPYTSTPVTST 489



 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 PLCTTSTGTRYSSVPATDT 169
           P  T+STGT  S +P+T T
Sbjct: 319 PASTSSTGTSSSPLPSTST 337



 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 110 TPLCTTSTGTRYSSVPAT 163
           T  CTTST   Y+S P T
Sbjct: 588 TTNCTTSTSVLYTSTPIT 605


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 233 SIXTGYAQA-VPYERKIWRDRLKYQSPVHWNILFLYSWCRAE 111
           S  T + Q  VP+   + RD + +  P+HW +  L+S+CR +
Sbjct: 842 SSLTNFTQPLVPFS--VSRDPISFYHPLHWMLSNLFSYCRVD 881


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 TTSTGTRYSSVPATDTLNGLSRSCVHT 202
           TT++ +  +S+P TDT+NG +   + T
Sbjct: 126 TTNSYSNTNSLPITDTINGTTELIIPT 152


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 84  DDLYTLAELLRS---APRVQEQDIPVYRRLIL 170
           DD+ ++++LL     AP++QE D+  YR  I+
Sbjct: 136 DDVKSMSKLLAETVLAPKIQEDDLVHYRDSII 167


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 128 STGTRYSSVPATDTLNGLSRSCVHTEQPVH 217
           +TG   +S+ A+  LNG   + V   QP H
Sbjct: 588 ATGVSIASIVASVDLNGCKYTAVSRSQPRH 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,585
Number of Sequences: 5004
Number of extensions: 28119
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)