Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0091 - 681452-681739,682532-682630,682697-682838,682875-68...    29   2.2  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   3.9  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    27   6.8  
03_06_0020 - 31081330-31082219,31083140-31083632                       27   9.0  
03_06_0017 + 31068648-31069146,31070236-31071125                       27   9.0  

>11_01_0091 -
           681452-681739,682532-682630,682697-682838,682875-682991,
           683133-683176
          Length = 229

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 33  AKKRSDNMMHQNNYRPRDDL-YTLAELLRSAPRVQEQD 143
           A +  DN MH  NYR    L +TL ++L     V+EQ+
Sbjct: 43  ANRMPDNAMHNRNYRSALRLAWTLTDILDDLIEVEEQN 80


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 80  ARRLVHPC*ATPLCTTSTGTRYSSVPATDTLNGLSRSCVHTEQPVHTLXQYYIKNISI 253
           A RL HP  +  L      T   ++ A D LN +  + V  EQPVH      ++++SI
Sbjct: 257 AIRLAHPDCSFILDANEGYTANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSI 314


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 216 CTGCSV*TQDLERPFKVSVAGTLEYLVPVL 127
           C G S+   DL RP K ++A T EY+  +L
Sbjct: 335 CNGRSI-LWDLRRPVKAAIAATAEYVSGLL 363


>03_06_0020 - 31081330-31082219,31083140-31083632
          Length = 460

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 127 EYRNKIFQCTGD*YFKRSLQILRSYGTACAYPVSILHKEYFNILSL 264
           E R+K+ Q  GD   +   ++LR    AC       HK +   + L
Sbjct: 412 EVRSKVEQVVGDGEIRERARLLRDTARACVSEGGSSHKNFRKFIDL 457


>03_06_0017 + 31068648-31069146,31070236-31071125
          Length = 462

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 127 EYRNKIFQCTGD*YFKRSLQILRSYGTACAYPVSILHKEYFNILSL 264
           E R+K+ Q  GD   +   ++LR    AC       HK +   + L
Sbjct: 414 EVRSKVEQVVGDGEIRERARLLRDTARACVSEGGSSHKNFRKFIDL 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,351
Number of Sequences: 37544
Number of extensions: 179656
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)