Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.75 
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          28   4.0  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   27   7.0  
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                27   9.2  

>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1254

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +2

Query: 125 TSTGTRYSSVPATDTL---NGLSRSCVHTEQPVHTLXQYYIKNISISFHCIKLERQGXPR 295
           T TG  Y ++   +     + L+R  V T +P HT    Y + IS S  C+  +     +
Sbjct: 726 TPTGAYYQTISHANRCVLPDNLTRQQVRTTRPSHTPTGAYYQTISHSNRCVLPDHLTRQQ 785

Query: 296 ACNXRVNRVXERXYGREI 349
            C  R + +    Y + I
Sbjct: 786 VCTTRPSHMPTGVYYQTI 803


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 199 MNARSGETV*SISRRYTGISCSCTRGAERSSSARVY--KSSRGR*LFW 62
           M  RSGE V +ISRR   I C       R SSAR+   K +R +  FW
Sbjct: 53  MRGRSGEVVETISRRMIDI-CCLQETRWRGSSARMIMGKDTRYK-FFW 98


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 199 MNARSGETV*SISRRYTGISCSCTRGAERSSSARVY--KSSRGR*LFW 62
           M  RSGE V +ISRR   I C       R SSAR+   K +R +  FW
Sbjct: 53  MRGRSGEVVETISRRMIDI-CCLQETRWRGSSARMIMGKDTRYK-FFW 98


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 199 MNARSGETV*SISRRYTGISC-SCTRGAERSSSARVYKSSRGR*LFW 62
           M  RSGE V +ISRR   I C   TR    S+   + K +R +  FW
Sbjct: 53  MRGRSGEVVETISRRMIDICCLQETRWRGSSAQMIMGKDTRYK-FFW 98


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 32  GQKAFGQHDAPEQLPPARRLVHPC*ATPLCTTSTGTRYSSVPATDTL 172
           G  A   H +P  + PA     P  ATPL +  TG  + S P+T ++
Sbjct: 773 GLPAVSAHISPGPMAPAGT---PPPATPLSSDGTGPHFKSGPSTPSV 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,098
Number of Sequences: 59808
Number of extensions: 218099
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)