Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL132863-3|CAB60570.1|  412|Caenorhabditis elegans Hypothetical ...    27   8.1  

>L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical
           protein C06E1.7 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 143 YSSVPATDTLNGLSRSCVHTEQPVHTLXQYYIKNIS 250
           +S +P +D+ N +SR C+H  +      Q++  N+S
Sbjct: 189 FSPLPNSDSSNFISRICIHIRRTDFVDGQHHSSNVS 224


>AL132863-3|CAB60570.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37H2A.5 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  QNNYRPRDDLYTLAELLRSAPRVQEQDIPVYRRLIL*TVSPD 188
           ++NY PRDD Y+ A+   S     E D   Y RL+  T+  D
Sbjct: 141 KDNYTPRDDSYSEADDYNSE---YEDDYDDYERLLKDTIIYD 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,681
Number of Sequences: 27780
Number of extensions: 156888
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)