Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0417
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    29   1.4  
At2g34960.1 68415.m04290 amino acid permease family protein simi...    28   3.3  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    27   7.5  

>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 92  VHPC*ATPLCTTSTGTRYSSVPATDTLNGLSRSCVHT--EQPVHTLXQYYIKNISISFHC 265
           +H C  T  C  + G+ +   P+   LN  + SC+ T  E+P +      +   +I F  
Sbjct: 287 IHNCSDTSTCENTLGSFHCQCPSGSDLNTTTMSCIDTPKEEPKYLGWTTVLLGTTIGFLI 346

Query: 266 IKL 274
           I L
Sbjct: 347 ILL 349


>At2g34960.1 68415.m04290 amino acid permease family protein similar
           to cationic amino acid transporter 3 [Rattus norvegicus]
           GI:2116552; contains Pfam profile PF00324: Amino acid
           permease
          Length = 569

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
 Frame = +2

Query: 32  GQKAFGQHDA-PEQLPPARRLVHPC*ATPL-------CTTSTGTRYSSVPATDTLNGLSR 187
           GQ  +  H A    +PP   LVHP   TP+         ++    +S +    +L  +S 
Sbjct: 362 GQARYVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSIST 421

Query: 188 SCVHTEQPVHTL-XQYYIKNISISFHCIKL 274
             + T  P+  L  +YY++  +   H IKL
Sbjct: 422 LFIFTMMPIALLVRRYYVRQDTPRVHLIKL 451


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 35  QKAFGQHDAPEQLPPARRLVHPC*ATPLCTTSTGTRYSSVPATDTLNGLSRSCV 196
           Q AF    AP   PP   ++ P   +P     + + Y+  P+    +G SRS +
Sbjct: 746 QNAFKPVVAPTTTPPRTLVIGPSSPSPPPPPRSSSPYARRPSPPRTSGFSRSVI 799


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,219,077
Number of Sequences: 28952
Number of extensions: 144367
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)