Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0412
         (417 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   0.68 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   2.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    20   8.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   8.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    20   8.4  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 277 QEAEDACSAMNGTEMLGATLKVEISRKRD 363
           + A D C+  N T++L   LK++I ++ +
Sbjct: 211 KRASDLCNEANKTKILLVGLKIDIDQEEE 239


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 246 GGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTY 145
           GG SA++ + +  +LS+       L PS  PP++
Sbjct: 93  GGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 264 FYETKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 130
           F   KP G  +T T    P LSN    +     ++   + T +PP
Sbjct: 119 FESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPP 163


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 383 NPPLRGPSRFLEISTFKVAPNISVPF 306
           +P    P RF + +  K+ P   +PF
Sbjct: 392 DPEKFDPERFSDENKAKIVPGTYMPF 417


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 380 PPLRGPSRFLEISTFKVAPN 321
           PP R P  +++ ++++  PN
Sbjct: 118 PPARSPYEWIKKTSYQSQPN 137


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 380 PPLRGPSRFLEISTFKVAPN 321
           PP R P  +++ ++++  PN
Sbjct: 118 PPARSPYEWIKKTSYQSQPN 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,459
Number of Sequences: 336
Number of extensions: 1775
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)