Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0412
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 8e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.013
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.17
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.38
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.38
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.51
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 28 0.51
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 0.51
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 0.88
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 2.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 2.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 2.0
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 2.7
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 26 2.7
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 2.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.2
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 6.2
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 6.2
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 24 8.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 8.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 24 8.2
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 24 8.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 24 8.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 8.2
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 8e-04
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 235 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 345
+KSP F FI FEN A++A +++NG+ G TLKVE
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.013
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
R+YVGGL I+ DLE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 231 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 127
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 229 GSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 357
G S F F+EF++ A A AMNG + G L++++S +
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.38
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-GFV 256
+M T V+VGGL + ++DL+ F +G++ ++ + GFV
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFV 337
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.51
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 229
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 28.3 bits (60), Expect = 0.51
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 217 KLSLGSTKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKV 342
++ LG+T R F+ +EN+Q+A AC ++G + L V
Sbjct: 40 QIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 0.51
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 235 TKSPR-FRFIEFENLQEAEDACSAMNG--TEMLGATLKVEISRK 357
T++ R F F+E+E+ ++AEDA ++G E G L+VE +++
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQ 86
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKL 217
+YV G +G++ +L EF+ +G L
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPL 33
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 0.88
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 241
+++ L K+ D+EREF +YG + + V N
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 294 RIFRLLQVLKFYETKPGGFSATQTEFSF 211
R F+LL + F E + G SA+QT+F+F
Sbjct: 70 RYFKLLCSIGFKEIEVGFPSASQTDFAF 97
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 2.0
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +2
Query: 125 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
++ V++G L ++++E F K+GK+ +
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHI 328
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 237 SATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 133
S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 803 SSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 176 KEDLEREFDKYGKLNSVWVAL 238
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 409 EVTAAPTS*THLCGGRPAF*RSLLSKWR 326
E+T PTS L GR RS L +WR
Sbjct: 51 EITGIPTSERGLVNGRIRSYRSTLEEWR 78
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
+S + F+ +++ + A+ A AMN ++ + V + KR+
Sbjct: 138 RSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 256 FIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
F++FEN AE A + ++ G T+K I + D
Sbjct: 558 FVKFENADFAEKAITGLHQRWFGGRTIKASILPETD 593
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = -1
Query: 312 TIHRATRIFRLLQVLKFYETKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 136
T+H + R+LQVLK + + +F L N RS + ++ P V
Sbjct: 384 TVHVYSDAMRVLQVLKLFHQHKDSDDPQKFMLAFGRLLNDSQRSEDIYNNSSSPELREV 442
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 6.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 285 RLLQVLKFYETKPG 244
RL+++ K+YET PG
Sbjct: 117 RLIEIWKYYETAPG 130
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 287 SASCKFSNSMKRNLGDLVLPKLSLVFHIYRTRVRDL 180
SA + ++K GD+ PK S VF IY+ + +
Sbjct: 988 SAMIQILKTVKEIHGDVEFPKSSRVFGIYQNGAKKI 1023
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 119 TMSSGGTRVYVGGLVEGIKKE 181
TM+ GGTRV GG+ I +
Sbjct: 785 TMTGGGTRVKKGGMSSAITSD 805
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 24.2 bits (50), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -2
Query: 398 RXDLLNPPLRGPSRFLEISTFKVAPNISVPFIALHASSASCKFSNSMKRNLGDLVLPK 225
R + LN S FL+ S V PN+S + HA S + + G L+ PK
Sbjct: 478 RSNELNGSSASSSIFLQ-SNNAVNPNVSPSTVLEHAKHPSLAKHSGVSLRTGLLIYPK 534
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 150 SAVSSRESRRKISNASSINMEN*TQ 224
SA S R ISN SS+N+ N T+
Sbjct: 147 SAKSLRSCNISISNCSSVNLHNATK 171
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 146 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 244
Y G LV+G +K +E D +LNS+ ++P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 8.2
Identities = 18/41 (43%), Positives = 18/41 (43%)
Frame = -1
Query: 273 VLKFYETKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPP 151
VL Y SA T S P S RSRSS P T PP
Sbjct: 195 VLPSYVRSNSRSSARSTARSAPR-STQRSRSSSANPVTTPP 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,250
Number of Sequences: 5004
Number of extensions: 28541
Number of successful extensions: 125
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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