Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0412
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 8e-08
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 53 1e-07
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-07
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 37 0.008
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 36 0.013
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.013
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.023
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.054
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 34 0.054
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.054
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.12
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.38
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 0.88
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 0.88
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.2
SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 29 1.5
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 1.5
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 2.0
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 2.0
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 53.2 bits (122), Expect = 8e-08
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
+RVY+G + + K ++EREF+ +G L VWVA NPPGF
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGF 40
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 244 PRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
P F F FE+ ++AEDA ++G + G +VE+++
Sbjct: 38 PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
T++YVG L +LER F+K+G+L+ VWVA NPPGF
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGF 42
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
T+VY+G L + K ++E EF YG L VWVA NPPGF
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGF 70
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV--EISRKRD 363
+S F F+ F N ++A+ A ++NG E+ G TLK+ ISR RD
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSISRGRD 140
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 36.7 bits (81), Expect = 0.008
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
+ F+EFE+ ++A+DA NG EMLG + VE SR
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEMLGERILVEHSR 72
Score = 30.3 bits (65), Expect = 0.67
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
RVY+G L G ++D+ R F YG+L + + N GFV
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLK-NNYGFV 41
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.9 bits (79), Expect = 0.013
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
+ F+EF++ ++AEDA +NG +++G + VE S+ R
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGR 760
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.013
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 244 PRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
P F F+EFE+ ++AEDA +G E G ++VE R
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPR 336
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 125 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
+S RVYVG L + ++++DL F KYG + V
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.5 bits (78), Expect = 0.018
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 345
+ +E+E +EA+ A A+NG EMLG + V+
Sbjct: 336 YALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
KS F F+ FE +EAE+A + +NG E+ G L ++KR
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKR 187
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 33.9 bits (74), Expect = 0.054
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
F F+ ++N+ A++A MNG ++ LKV++ R +D
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKD 342
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 33.9 bits (74), Expect = 0.054
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
F F+ ++N+ A++A MNG ++ LKV++ R +D
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKD 357
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.054
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
TR++VGGL I +LEREFD++G + +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSV 226
++VG L E I++ED+ + F +YG++ SV
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
Score = 30.3 bits (65), Expect = 0.67
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSV 226
++VGG+ + ++ +ER F +YG++ V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 122 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 217
M+S GT+++VG L + K DLE F YGKL
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKL 32
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 342
K + FIE+EN Q A DA ++MN ++ G L+V
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.3 bits (65), Expect = 0.67
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
+ F+ ++N +A A MNG + TLKV +R
Sbjct: 70 YAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 0.88
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSV 226
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.9 bits (64), Expect = 0.88
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 232 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 342
+ +S + F++F + A+ A MNG E+ G LK+
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 0.88
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
T +YVGGL + ++DL F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 0.88
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 125 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 211
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 253 RFIEFENLQEAEDACSAMNGTEM-LGATLKVEISRKR 360
RF+ F + +EAE A +G ++ G L+V++S+KR
Sbjct: 146 RFVGFSSYREAEHAIRKFDGFDLGQGLRLRVQLSKKR 182
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 253 RFIEFENLQEAEDACSAMNGTEM-LGATLKVEISRKR 360
RF+ F + +EAE A +G ++ G L+V++S+KR
Sbjct: 46 RFVGFSSYREAEHAIRKFDGFDLGQGLRLRVQLSKKR 82
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 143 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 232
VYVG L + DL + F++YGK+ V +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI 41
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 241
+++VGGL KE L+ F KYG+L V + ++
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD 63
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLG 327
+ F+EF+ +AEDA NG +MLG
Sbjct: 40 YGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKL 217
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 2.0
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLN 220
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 412 PEVTAAPTS*TH--LCG-GRPAF*RSLLSKWRLTSQYHSSRYTHLPPPASS 269
P++T AP H LC G P + T++YH ++T LPPP+ S
Sbjct: 136 PKLTKAPKGAWHCVLCSTGIPPQSPLTSTICEETTEYHPEQHTPLPPPSKS 186
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 128 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
S TRVY G L ++ DLE+ YG++ + + L GFV
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLG-YGFV 43
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLG 327
+ F+EF++ ++A+D +NG +LG
Sbjct: 40 YGFVEFDDYRDADDCVYDLNGRNLLG 65
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKL 217
T VYVG L +K +L++ F +YG +
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSI 641
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 205 IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
IW K GS+K + +E+ A A NG + +G ++KVE++ R
Sbjct: 207 IWIYKHPDGSSKGECT--VTYEDPPTASAAIEWFNGKDFMGQSIKVELAEAR 256
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
F F+++ ++A+ A +NG + LKV SR
Sbjct: 90 FGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
>SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 198 NSRSRSSFLIPSTRPPTYTRVPPELMV 118
N SRS+FL+P+ PT+ +V +L V
Sbjct: 110 NPGSRSAFLLPTMAYPTFIQVMRDLKV 136
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 241 SPRFRFIEFENLQEAEDACSAMNGTEMLG 327
SP +EF++ ++A+DA +N E+LG
Sbjct: 304 SPSKENLEFDDARDADDAVYELNHKELLG 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,187
Number of Sequences: 59808
Number of extensions: 196194
Number of successful extensions: 555
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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