Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0412
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 49 1e-06
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 49 1e-06
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 49 1e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 41 4e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 41 4e-04
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 36 0.009
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 36 0.009
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 36 0.009
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.027
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.027
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.027
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.027
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.027
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 34 0.048
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 34 0.048
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.063
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.063
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.063
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.083
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 32 0.15
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.25
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.25
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 0.59
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 0.59
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 30 0.59
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 30 0.59
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 30 0.78
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 0.78
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 1.4
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 1.8
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 1.8
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 1.8
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 1.8
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 1.8
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 1.8
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 1.8
Z81119-9|CAB03339.1| 502|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 27 4.1
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 27 4.1
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 27 4.1
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 5.5
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 5.5
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 7.2
U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 26 9.5
AC024877-11|AAF60897.2| 621|Caenorhabditis elegans Hypothetical... 26 9.5
AC024877-10|ABA00174.1| 613|Caenorhabditis elegans Hypothetical... 26 9.5
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
+VYVGGL ++LE FD++G++ VWVA PPGF
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGF 41
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 193 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 351
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
+VYVGGL ++LE FD++G++ VWVA PPGF
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGF 41
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 193 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 351
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGF 253
+VYVGGL ++LE FD++G++ VWVA PPGF
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGF 41
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +1
Query: 193 RVR*IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 351
R+R +W + + P F F+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 220 LSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
+ + S + P F F+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 122 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 220 LSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
+ + S + P F F+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 122 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 36.3 bits (80), Expect = 0.009
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F++FE+ ++AEDAC ++G M G+++++ + R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 36.3 bits (80), Expect = 0.009
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F++FE+ ++AEDAC ++G M G+++++ + R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 36.3 bits (80), Expect = 0.009
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F++FE+ ++AEDAC ++G M G+++++ + R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 414
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 507
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.027
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.9 bits (74), Expect = 0.048
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 211 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.9 bits (74), Expect = 0.048
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 211 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+EF++ ++AEDA +NG E+ G + ++ S+ R
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPR 74
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
R+Y+G L + ++D+E F YG++ V + N GFV
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGFV 41
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+EF++ ++AEDA +NG E+ G + ++ S+ R
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPR 74
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
R+Y+G L + ++D+E F YG++ V + N GFV
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGFV 41
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F+EF++ ++AEDA +NG E+ G + ++ S+ R
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPR 74
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
R+Y+G L + ++D+E F YG++ V + N GFV
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKNGFGFV 41
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.083
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
F F++F++ ++A+DA +NG E+ G + +E R++
Sbjct: 37 FGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRK 73
Score = 29.9 bits (64), Expect = 0.78
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFV 256
RVY+G L D+E F YGKL+ V + N GFV
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKNGFGFV 40
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
F ++ FEN Q+ A S +NG + LKV +++RD
Sbjct: 55 FAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 235 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 357
T PR F FIEF A+ A MNG E G L+V ++ K
Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVE 345
K + FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 57 KPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.25
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 229
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 0.59
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 211 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
K + S S F FI F + + ++ A AMNG + + V + KRD
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 181
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 0.59
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 211 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
K + S S F FI F + + ++ A AMNG + + V + KRD
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 191
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 119 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 217
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 226
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 119 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 217
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.9 bits (64), Expect = 0.78
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 363
T PR F F+EF A+ A NG + G L+V +++ R+
Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNRN 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 345
+ +E+E +EA +A N T++LG +KV+
Sbjct: 98 YALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 351
+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 177 YGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 185 LEREFDKYGKLNSVWVALNPPGF 253
+E F G + S+W+A PPGF
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGF 66
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 238 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 348
+ P F F+ F+ A DA +NG ++ KVE+
Sbjct: 62 RPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 259 IEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 354
+EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 165 VEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 259 IEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 354
+EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 165 VEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 134 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNS 223
T VYV + KE LE+ F K+G + S
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITS 241
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 134 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 294
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNS 223
T VYV + KE LE+ F K+G + S
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITS 181
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 134 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNS 223
T VYV + KE LE+ F K+G + S
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITS 178
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 134 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 137 TRVYVGGLVEGIKKEDLEREFDKYGKLNS 223
T VYV + KE LE+ F K+G + S
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITS 241
>Z81119-9|CAB03339.1| 502|Caenorhabditis elegans Hypothetical
protein T10H4.11 protein.
Length = 502
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 152 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFVS 259
GGLVEG ++E+ F GK+ +VW+ P F+S
Sbjct: 49 GGLVEGYA--EIEKSF---GKVYTVWIGPMPTVFIS 79
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 235 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 357
T PR F F+EF A+ A +NG G L+V + K
Sbjct: 43 TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
R+YV + +++DL F YG++ SV + N G
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG 88
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 250
R+YV + +++DL F YG++ SV + N G
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRG 88
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 354
F F+ FE+ +A A + +N M LKVE +R
Sbjct: 219 FAFVTFESRDDAARAIAELNDIRMYHMVLKVEWTR 253
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKL 217
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKL 217
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 140 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 241
R+++ L K++DL+ F KYG+++ V V ++
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVID 313
>U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical
protein F21F3.6 protein.
Length = 234
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 180 SFLIPSTRPPTYTRVPPEL 124
+F + TRPP YTR+P ++
Sbjct: 210 AFAVDFTRPPPYTRLPTDV 228
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 232 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
+TKS + F+ + +EAE A MNG + T++ + ++
Sbjct: 59 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 101
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 232 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
+TKS + F+ + +EAE A MNG + T++ + ++
Sbjct: 69 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 111
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 232 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
+TKS + F+ + +EAE A MNG + T++ + ++
Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 232 STKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 360
+TKS + F+ + +EAE A MNG + T++ + ++
Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 182
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 250 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 351
F F++F A+++C ++NG L V ++
Sbjct: 121 FGFVQFNEAGSADESCRSLNGMSWKACCLDVHLA 154
>AC024877-11|AAF60897.2| 621|Caenorhabditis elegans Hypothetical
protein Y95B8A.12a protein.
Length = 621
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 226 LGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLK 339
LGS + RF EFE + A++ C + ++L A L+
Sbjct: 300 LGSIRQKEERFTEFERICLADERCFRLQLEDLLIAPLQ 337
>AC024877-10|ABA00174.1| 613|Caenorhabditis elegans Hypothetical
protein Y95B8A.12b protein.
Length = 613
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 226 LGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLK 339
LGS + RF EFE + A++ C + ++L A L+
Sbjct: 292 LGSIRQKEERFTEFERICLADERCFRLQLEDLLIAPLQ 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,189
Number of Sequences: 27780
Number of extensions: 154136
Number of successful extensions: 600
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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