Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0409
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.64 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.64 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   0.64 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.64 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.64 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.64 
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    24   0.64 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.64 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.64 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   3.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   3.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   3.4  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 231 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 275


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 231 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 275


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 253 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 297


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 231 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 275


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 187 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 231


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 231 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 275


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 19  QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 63


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 255 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 299


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 231 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 275


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITE 244
           +T EL K F+F     +++ I   H L +TE
Sbjct: 17  QTLELEKEFHFNHYLTRRRRIEIAHALCLTE 47


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITE 244
           +T EL K F+F     +++ I   H L +TE
Sbjct: 168 QTLELEKEFHFNHYLTRRRRIEIAHALCLTE 198


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITE 244
           +T EL K F+F     +++ I   H L +TE
Sbjct: 227 QTLELEKEFHFNHYLTRRRRIEIAHALCLTE 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,469
Number of Sequences: 336
Number of extensions: 1580
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)