Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0409
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.49 
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   4.5  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    25   7.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.9  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.9  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 211  TCGSKNLSVIVLCDNQYVYCENKLLFLI 294
            TC ++N+ V+V+CD   +  E+K++ +I
Sbjct: 1908 TCRNRNVKVMVVCDGYPLIYEHKIVLMI 1935


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 317 LVNSHVSSNLLNYRDSTTFSIEIISPKY 400
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 323 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 421
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 324 LTKYFNFETINEKQKFIFTVHILIIT 247
           L K+FN  +I E+ K I  V  L+IT
Sbjct: 17  LAKWFNTLSIKERAKIIRDVSSLVIT 42


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 320 PNILILKPLMRNKSLFSQYTY*LSQR--TITLRFLDPQVFIGLQILHLLHPRPVLPQ*KQ 147
           P  ++LK L        QY Y  S R   I L  LD    + L+I+   HP  ++    Q
Sbjct: 331 PEYILLKKLSETIVALGQYNYLDSNRRKCIKLTSLDTYSLLVLEIMK--HPSLLISAISQ 388

Query: 146 HLFL 135
           H ++
Sbjct: 389 HFWV 392


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 383 SQLRMLCYHDNSVGYLKHES*PNILILKPLMRNKSLF 273
           +QL+ LC+ DN + Y+  ++  + L    L ++K +F
Sbjct: 422 NQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVF 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,209
Number of Sequences: 5004
Number of extensions: 25243
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)